miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22421 5' -45.6 NC_005056.1 + 21370 0.66 0.989613
Target:  5'- -aCUGGAAGCcAGUgUCGCuccgucACUGGCc -3'
miRNA:   3'- ggGACUUUUGuUCAaAGUGc-----UGACCG- -5'
22421 5' -45.6 NC_005056.1 + 22428 0.66 0.981722
Target:  5'- gCCCUGAcggcAACGGGUgcggccUUACGGCgUGGa -3'
miRNA:   3'- -GGGACUu---UUGUUCAa-----AGUGCUG-ACCg -5'
22421 5' -45.6 NC_005056.1 + 14936 0.67 0.976394
Target:  5'- aCCUGu-GGCAAGcg-CACGGCUGa- -3'
miRNA:   3'- gGGACuuUUGUUCaaaGUGCUGACcg -5'
22421 5' -45.6 NC_005056.1 + 25903 0.67 0.96639
Target:  5'- -gCUGAcGGAUAAGcugCACGACgGGCa -3'
miRNA:   3'- ggGACU-UUUGUUCaaaGUGCUGaCCG- -5'
22421 5' -45.6 NC_005056.1 + 314 0.69 0.943669
Target:  5'- uCCCguuacAGGACAGGaUUCgggaaauaaACGGCUGGCu -3'
miRNA:   3'- -GGGac---UUUUGUUCaAAG---------UGCUGACCG- -5'
22421 5' -45.6 NC_005056.1 + 19341 0.69 0.938152
Target:  5'- gCCCUGAAAucaGCGAacGUUUUACuGGCagcGGCa -3'
miRNA:   3'- -GGGACUUU---UGUU--CAAAGUG-CUGa--CCG- -5'
22421 5' -45.6 NC_005056.1 + 20036 0.69 0.9323
Target:  5'- aCCCUGAAccguugccguGACAcgGGUgUCAUGuucgggcaggcACUGGCu -3'
miRNA:   3'- -GGGACUU----------UUGU--UCAaAGUGC-----------UGACCG- -5'
22421 5' -45.6 NC_005056.1 + 3631 0.69 0.919587
Target:  5'- gCCCUGAAAACcuGaUUUCAgUGGCaacGGCg -3'
miRNA:   3'- -GGGACUUUUGuuC-AAAGU-GCUGa--CCG- -5'
22421 5' -45.6 NC_005056.1 + 19740 0.7 0.898006
Target:  5'- --aUGggGGCAAucUUCACGACgguUGGCa -3'
miRNA:   3'- gggACuuUUGUUcaAAGUGCUG---ACCG- -5'
22421 5' -45.6 NC_005056.1 + 9166 0.72 0.816568
Target:  5'- gCCCUGAacaggccucAAugGAGUUUUACGGC-GGa -3'
miRNA:   3'- -GGGACU---------UUugUUCAAAGUGCUGaCCg -5'
22421 5' -45.6 NC_005056.1 + 29973 0.74 0.716312
Target:  5'- gCCUGuuGGCGAGUUUUAUGACgccgauuuucauUGGUa -3'
miRNA:   3'- gGGACuuUUGUUCAAAGUGCUG------------ACCG- -5'
22421 5' -45.6 NC_005056.1 + 27546 0.76 0.619923
Target:  5'- gCCUGAAAAC-GGUUUCGCG-C-GGCu -3'
miRNA:   3'- gGGACUUUUGuUCAAAGUGCuGaCCG- -5'
22421 5' -45.6 NC_005056.1 + 8053 0.79 0.434667
Target:  5'- aCCCUGuccAGCGAGgcgCGCaGGCUGGCg -3'
miRNA:   3'- -GGGACuu-UUGUUCaaaGUG-CUGACCG- -5'
22421 5' -45.6 NC_005056.1 + 29214 1.17 0.001882
Target:  5'- gCCCUGAAAACAAGUUUCACGACUGGCg -3'
miRNA:   3'- -GGGACUUUUGUUCAAAGUGCUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.