Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 21370 | 0.66 | 0.989613 |
Target: 5'- -aCUGGAAGCcAGUgUCGCuccgucACUGGCc -3' miRNA: 3'- ggGACUUUUGuUCAaAGUGc-----UGACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 22428 | 0.66 | 0.981722 |
Target: 5'- gCCCUGAcggcAACGGGUgcggccUUACGGCgUGGa -3' miRNA: 3'- -GGGACUu---UUGUUCAa-----AGUGCUG-ACCg -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 14936 | 0.67 | 0.976394 |
Target: 5'- aCCUGu-GGCAAGcg-CACGGCUGa- -3' miRNA: 3'- gGGACuuUUGUUCaaaGUGCUGACcg -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 25903 | 0.67 | 0.96639 |
Target: 5'- -gCUGAcGGAUAAGcugCACGACgGGCa -3' miRNA: 3'- ggGACU-UUUGUUCaaaGUGCUGaCCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 314 | 0.69 | 0.943669 |
Target: 5'- uCCCguuacAGGACAGGaUUCgggaaauaaACGGCUGGCu -3' miRNA: 3'- -GGGac---UUUUGUUCaAAG---------UGCUGACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 19341 | 0.69 | 0.938152 |
Target: 5'- gCCCUGAAAucaGCGAacGUUUUACuGGCagcGGCa -3' miRNA: 3'- -GGGACUUU---UGUU--CAAAGUG-CUGa--CCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 20036 | 0.69 | 0.9323 |
Target: 5'- aCCCUGAAccguugccguGACAcgGGUgUCAUGuucgggcaggcACUGGCu -3' miRNA: 3'- -GGGACUU----------UUGU--UCAaAGUGC-----------UGACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 3631 | 0.69 | 0.919587 |
Target: 5'- gCCCUGAAAACcuGaUUUCAgUGGCaacGGCg -3' miRNA: 3'- -GGGACUUUUGuuC-AAAGU-GCUGa--CCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 19740 | 0.7 | 0.898006 |
Target: 5'- --aUGggGGCAAucUUCACGACgguUGGCa -3' miRNA: 3'- gggACuuUUGUUcaAAGUGCUG---ACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 9166 | 0.72 | 0.816568 |
Target: 5'- gCCCUGAacaggccucAAugGAGUUUUACGGC-GGa -3' miRNA: 3'- -GGGACU---------UUugUUCAAAGUGCUGaCCg -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 29973 | 0.74 | 0.716312 |
Target: 5'- gCCUGuuGGCGAGUUUUAUGACgccgauuuucauUGGUa -3' miRNA: 3'- gGGACuuUUGUUCAAAGUGCUG------------ACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 27546 | 0.76 | 0.619923 |
Target: 5'- gCCUGAAAAC-GGUUUCGCG-C-GGCu -3' miRNA: 3'- gGGACUUUUGuUCAAAGUGCuGaCCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 8053 | 0.79 | 0.434667 |
Target: 5'- aCCCUGuccAGCGAGgcgCGCaGGCUGGCg -3' miRNA: 3'- -GGGACuu-UUGUUCaaaGUG-CUGACCG- -5' |
|||||||
22421 | 5' | -45.6 | NC_005056.1 | + | 29214 | 1.17 | 0.001882 |
Target: 5'- gCCCUGAAAACAAGUUUCACGACUGGCg -3' miRNA: 3'- -GGGACUUUUGUUCAAAGUGCUGACCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home