miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22422 5' -54.5 NC_005056.1 + 10134 0.66 0.571017
Target:  5'- cGGCGAuauccuGCGCACGccggucGGCUcacGGGugAUGCg -3'
miRNA:   3'- cUUGCU------CGCGUGC------UCGA---UCCugUGCG- -5'
22422 5' -54.5 NC_005056.1 + 11139 0.67 0.526163
Target:  5'- -cACG-GCacaGCACcGGCUGGGGCGCGa -3'
miRNA:   3'- cuUGCuCG---CGUGcUCGAUCCUGUGCg -5'
22422 5' -54.5 NC_005056.1 + 8045 0.67 0.515149
Target:  5'- cAGCGAGgCGCGCaGGCUGGcGuuuuCAUGCu -3'
miRNA:   3'- cUUGCUC-GCGUGcUCGAUC-Cu---GUGCG- -5'
22422 5' -54.5 NC_005056.1 + 6524 0.68 0.49341
Target:  5'- -cACGAuGCaGCGCG-GCUuguccuGGAUACGCg -3'
miRNA:   3'- cuUGCU-CG-CGUGCuCGAu-----CCUGUGCG- -5'
22422 5' -54.5 NC_005056.1 + 2891 0.68 0.461624
Target:  5'- aAAC-AGCGCgACG-GCUGGGACAgCGUu -3'
miRNA:   3'- cUUGcUCGCG-UGCuCGAUCCUGU-GCG- -5'
22422 5' -54.5 NC_005056.1 + 10623 0.69 0.441043
Target:  5'- uGAAUGAGgcUGCACGGGC--GGugAUGCu -3'
miRNA:   3'- -CUUGCUC--GCGUGCUCGauCCugUGCG- -5'
22422 5' -54.5 NC_005056.1 + 8776 0.69 0.43095
Target:  5'- uGAcCGAGCGCACGcuggucAGUgagguGGACgGCGCa -3'
miRNA:   3'- -CUuGCUCGCGUGC------UCGau---CCUG-UGCG- -5'
22422 5' -54.5 NC_005056.1 + 16500 0.72 0.267546
Target:  5'- uAGCGcgcagacccAGCGCACGGGCgguGGcAUACGCg -3'
miRNA:   3'- cUUGC---------UCGCGUGCUCGau-CC-UGUGCG- -5'
22422 5' -54.5 NC_005056.1 + 5358 0.73 0.246851
Target:  5'- uGAACGGcGUGCugGAGC-AGGGCAaaggUGCa -3'
miRNA:   3'- -CUUGCU-CGCGugCUCGaUCCUGU----GCG- -5'
22422 5' -54.5 NC_005056.1 + 1526 0.98 0.004036
Target:  5'- aGAACGAGCGCACGAGCUGGaACACGCc -3'
miRNA:   3'- -CUUGCUCGCGUGCUCGAUCcUGUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.