miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22423 5' -56.8 NC_005056.1 + 21380 0.66 0.495524
Target:  5'- aGUGuCg--CU-CCGUCACUGGCCGg -3'
miRNA:   3'- cCACuGuuaGAcGGCGGUGACCGGCa -5'
22423 5' -56.8 NC_005056.1 + 9870 0.66 0.48177
Target:  5'- cGUGGCAGUaacagaaccggaagCUGUCa-CGCUGGCCGUu -3'
miRNA:   3'- cCACUGUUA--------------GACGGcgGUGACCGGCA- -5'
22423 5' -56.8 NC_005056.1 + 23494 0.66 0.468203
Target:  5'- --cGGCGAUCUGCuCGCUGaccugcccauucuuuCUGGCUGg -3'
miRNA:   3'- ccaCUGUUAGACG-GCGGU---------------GACCGGCa -5'
22423 5' -56.8 NC_005056.1 + 16236 0.66 0.464068
Target:  5'- cGGUuaccGAC--UCUGCCGCCAgcagGGCCu- -3'
miRNA:   3'- -CCA----CUGuuAGACGGCGGUga--CCGGca -5'
22423 5' -56.8 NC_005056.1 + 7689 0.66 0.453815
Target:  5'- --gGGCGGgagCUGCCGCCugaaucGCUuGCCGUg -3'
miRNA:   3'- ccaCUGUUa--GACGGCGG------UGAcCGGCA- -5'
22423 5' -56.8 NC_005056.1 + 10086 0.66 0.453815
Target:  5'- aGGUccccCGGUUgUGCCGCCGCUGucGCCGg -3'
miRNA:   3'- -CCAcu--GUUAG-ACGGCGGUGAC--CGGCa -5'
22423 5' -56.8 NC_005056.1 + 11025 0.67 0.433686
Target:  5'- cGUG-CAGUCUGCCGCCAUc-GuuGa -3'
miRNA:   3'- cCACuGUUAGACGGCGGUGacCggCa -5'
22423 5' -56.8 NC_005056.1 + 1701 0.67 0.427749
Target:  5'- cGGUGcCAGUaccacgcauccggcgCUGUCGCCACggugugacgGGUCGUa -3'
miRNA:   3'- -CCACuGUUA---------------GACGGCGGUGa--------CCGGCA- -5'
22423 5' -56.8 NC_005056.1 + 1352 0.67 0.385732
Target:  5'- aGGUGGCg--CUGCgucCGCUGCUGGUCa- -3'
miRNA:   3'- -CCACUGuuaGACG---GCGGUGACCGGca -5'
22423 5' -56.8 NC_005056.1 + 11433 0.69 0.300896
Target:  5'- --cGGCaAAUCUGCUGCCG-UGGCUGg -3'
miRNA:   3'- ccaCUG-UUAGACGGCGGUgACCGGCa -5'
22423 5' -56.8 NC_005056.1 + 11215 0.7 0.27842
Target:  5'- cGUGuCGAgCUgGCCGCacCACUGGCCGa -3'
miRNA:   3'- cCACuGUUaGA-CGGCG--GUGACCGGCa -5'
22423 5' -56.8 NC_005056.1 + 8091 0.7 0.264192
Target:  5'- uGGUGAUGgucGUCUGCUGuUCACUGGCgaCGUu -3'
miRNA:   3'- -CCACUGU---UAGACGGC-GGUGACCG--GCA- -5'
22423 5' -56.8 NC_005056.1 + 23254 0.73 0.161431
Target:  5'- ---cACGGaCUGCCGCCACUGGCgGa -3'
miRNA:   3'- ccacUGUUaGACGGCGGUGACCGgCa -5'
22423 5' -56.8 NC_005056.1 + 21607 0.76 0.101894
Target:  5'- gGGUGAUgguAAUCUGCgGgauuuuuuuaCCACUGGCCGUc -3'
miRNA:   3'- -CCACUG---UUAGACGgC----------GGUGACCGGCA- -5'
22423 5' -56.8 NC_005056.1 + 18750 0.77 0.093321
Target:  5'- cGGUGACAAUaCUGCCGCCuc-GGCgGa -3'
miRNA:   3'- -CCACUGUUA-GACGGCGGugaCCGgCa -5'
22423 5' -56.8 NC_005056.1 + 1982 0.97 0.002567
Target:  5'- uGGUGACAAUCUGCC-CCACUGGCCGUc -3'
miRNA:   3'- -CCACUGUUAGACGGcGGUGACCGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.