miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22424 5' -49.9 NC_005056.1 + 19332 0.66 0.861818
Target:  5'- -gACGUucccaGCUUGUGUUUaucaaaGCUGGCCu -3'
miRNA:   3'- ugUGUAug---CGGACGCAAAa-----UGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 26934 0.66 0.861818
Target:  5'- aACGCcucAUGCCaGCGcauacGCUGGCCu -3'
miRNA:   3'- -UGUGua-UGCGGaCGCaaaa-UGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 16063 0.66 0.852809
Target:  5'- uGCAacgACGCCgccaGCGUgccuuuUUUACcGGCCu -3'
miRNA:   3'- -UGUguaUGCGGa---CGCA------AAAUGaCCGG- -5'
22424 5' -49.9 NC_005056.1 + 2117 0.66 0.824194
Target:  5'- gGCGuCGUGCGCCaGCGUgg-ACggGGUg -3'
miRNA:   3'- -UGU-GUAUGCGGaCGCAaaaUGa-CCGg -5'
22424 5' -49.9 NC_005056.1 + 7874 0.67 0.802875
Target:  5'- gAUACGUACgGCCUgucgucaGCGUUUUGaggGGCg -3'
miRNA:   3'- -UGUGUAUG-CGGA-------CGCAAAAUga-CCGg -5'
22424 5' -49.9 NC_005056.1 + 29957 0.67 0.782784
Target:  5'- -gGCAUAUGCCUGU------UUGGCCu -3'
miRNA:   3'- ugUGUAUGCGGACGcaaaauGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 608 0.67 0.779549
Target:  5'- gGCAUGUGCGCCguuuucguaauacuUGCGgcggaacaGCgUGGCCg -3'
miRNA:   3'- -UGUGUAUGCGG--------------ACGCaaaa----UG-ACCGG- -5'
22424 5' -49.9 NC_005056.1 + 19673 0.68 0.760922
Target:  5'- uGC-CAUugGCCU-CGUagc-CUGGCCg -3'
miRNA:   3'- -UGuGUAugCGGAcGCAaaauGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 10264 0.68 0.727002
Target:  5'- aGCGCcgGgGUCUGCG----GCUGGUCa -3'
miRNA:   3'- -UGUGuaUgCGGACGCaaaaUGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 18776 0.68 0.715453
Target:  5'- gGCGCGccUGCUUGCGgagUGC-GGCCa -3'
miRNA:   3'- -UGUGUauGCGGACGCaaaAUGaCCGG- -5'
22424 5' -49.9 NC_005056.1 + 11311 0.69 0.68501
Target:  5'- gUACAgaaagACGCCUGCGU---ACUguugagcacaaugucGGCCa -3'
miRNA:   3'- uGUGUa----UGCGGACGCAaaaUGA---------------CCGG- -5'
22424 5' -49.9 NC_005056.1 + 21900 0.7 0.632702
Target:  5'- cGCGCAUG-GCCUGCGcUUUcgUGGCa -3'
miRNA:   3'- -UGUGUAUgCGGACGCaAAAugACCGg -5'
22424 5' -49.9 NC_005056.1 + 16472 0.71 0.585099
Target:  5'- -gGCAUACGCggugGCGguggUACUGGCg -3'
miRNA:   3'- ugUGUAUGCGga--CGCaaa-AUGACCGg -5'
22424 5' -49.9 NC_005056.1 + 4941 0.71 0.560357
Target:  5'- gACGCGUAcCGCCggcagguuaccgaUGCGUUU--CUGGCUg -3'
miRNA:   3'- -UGUGUAU-GCGG-------------ACGCAAAauGACCGG- -5'
22424 5' -49.9 NC_005056.1 + 2382 1.14 0.000851
Target:  5'- aACACAUACGCCUGCGUUUUACUGGCCg -3'
miRNA:   3'- -UGUGUAUGCGGACGCAAAAUGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.