miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22426 3' -47.5 NC_005056.1 + 27165 0.66 0.899584
Target:  5'- -----cGCuCAAUACCGGCGAugGUGUUc -3'
miRNA:   3'- uugaaaCG-GUUGUGGCCGUU--UACAAu -5'
22426 3' -47.5 NC_005056.1 + 1248 0.67 0.874637
Target:  5'- cAGCggugUGCUGAUACCGGCGgugAGUGg-- -3'
miRNA:   3'- -UUGaa--ACGGUUGUGGCCGU---UUACaau -5'
22426 3' -47.5 NC_005056.1 + 11949 0.67 0.862917
Target:  5'- cGGCgcggUUGCCGcugccagcuuuacuGCACCGGCAGugGUGa-- -3'
miRNA:   3'- -UUGa---AACGGU--------------UGUGGCCGUU--UACaau -5'
22426 3' -47.5 NC_005056.1 + 26237 0.68 0.836941
Target:  5'- cAGCaUUUGCCGcagGCACCGGUAAGg---- -3'
miRNA:   3'- -UUG-AAACGGU---UGUGGCCGUUUacaau -5'
22426 3' -47.5 NC_005056.1 + 21677 0.68 0.836941
Target:  5'- cACUUUGCCGuuACGCCGGUg------- -3'
miRNA:   3'- uUGAAACGGU--UGUGGCCGuuuacaau -5'
22426 3' -47.5 NC_005056.1 + 10743 0.72 0.614596
Target:  5'- -----cGCCGACACCGGCcguGAUGg-- -3'
miRNA:   3'- uugaaaCGGUUGUGGCCGu--UUACaau -5'
22426 3' -47.5 NC_005056.1 + 8689 0.74 0.470191
Target:  5'- -----cGCCAGCACCGGCAcAAUGa-- -3'
miRNA:   3'- uugaaaCGGUUGUGGCCGU-UUACaau -5'
22426 3' -47.5 NC_005056.1 + 3500 1.05 0.00438
Target:  5'- gAACUUUGCCAACACCGGCAAAUGUUAu -3'
miRNA:   3'- -UUGAAACGGUUGUGGCCGUUUACAAU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.