Results 1 - 11 of 11 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 4584 | 0.66 | 0.324715 |
Target: 5'- gGCUGGCUGcagaaaUACCGcaAUGAagcCCCGGCGc -3' miRNA: 3'- -CGACCGGCa-----GUGGC--UACU---GGGCCGUu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 21576 | 0.66 | 0.308893 |
Target: 5'- aCUGGCCGUCACCcccuGCCCcGCu- -3' miRNA: 3'- cGACCGGCAGUGGcuacUGGGcCGuu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 1999 | 0.68 | 0.258173 |
Target: 5'- aCUGGCCGUcCGCacaGAgaaGACCucCGGCAAg -3' miRNA: 3'- cGACCGGCA-GUGg--CUa--CUGG--GCCGUU- -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 20627 | 0.68 | 0.258173 |
Target: 5'- cGCUGGCCGgcgugcuuuaUC-CCGAacUGACC-GGCGGg -3' miRNA: 3'- -CGACCGGC----------AGuGGCU--ACUGGgCCGUU- -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 7459 | 0.68 | 0.238609 |
Target: 5'- cGCUGaCCGUaACCGGc-ACCCGGCAGg -3' miRNA: 3'- -CGACcGGCAgUGGCUacUGGGCCGUU- -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 8307 | 0.68 | 0.238609 |
Target: 5'- uGCaGGCCGggCGCUGGUGcaaCCGGCGc -3' miRNA: 3'- -CGaCCGGCa-GUGGCUACug-GGCCGUu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 2387 | 0.69 | 0.2203 |
Target: 5'- gGCUGGUugaCGUUgaccugACCGGUGACCCgauuguccugGGCAAu -3' miRNA: 3'- -CGACCG---GCAG------UGGCUACUGGG----------CCGUU- -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 16706 | 0.69 | 0.20877 |
Target: 5'- uGCUGGCCGaCA-CGAUGGCUgaGGCGc -3' miRNA: 3'- -CGACCGGCaGUgGCUACUGGg-CCGUu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 10408 | 0.76 | 0.063226 |
Target: 5'- gGCUGGCCGgUAUCGGUGugCUGGCc- -3' miRNA: 3'- -CGACCGGCaGUGGCUACugGGCCGuu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 20709 | 0.77 | 0.056194 |
Target: 5'- gGCgUGGCCGUUGCUgGAUGGCaCCGGCAu -3' miRNA: 3'- -CG-ACCGGCAGUGG-CUACUG-GGCCGUu -5' |
|||||||
22426 | 5' | -59.6 | NC_005056.1 | + | 3535 | 1.07 | 0.000222 |
Target: 5'- gGCUGGCCGUCACCGAUGACCCGGCAAg -3' miRNA: 3'- -CGACCGGCAGUGGCUACUGGGCCGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home