miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22426 5' -59.6 NC_005056.1 + 4584 0.66 0.324715
Target:  5'- gGCUGGCUGcagaaaUACCGcaAUGAagcCCCGGCGc -3'
miRNA:   3'- -CGACCGGCa-----GUGGC--UACU---GGGCCGUu -5'
22426 5' -59.6 NC_005056.1 + 21576 0.66 0.308893
Target:  5'- aCUGGCCGUCACCcccuGCCCcGCu- -3'
miRNA:   3'- cGACCGGCAGUGGcuacUGGGcCGuu -5'
22426 5' -59.6 NC_005056.1 + 1999 0.68 0.258173
Target:  5'- aCUGGCCGUcCGCacaGAgaaGACCucCGGCAAg -3'
miRNA:   3'- cGACCGGCA-GUGg--CUa--CUGG--GCCGUU- -5'
22426 5' -59.6 NC_005056.1 + 20627 0.68 0.258173
Target:  5'- cGCUGGCCGgcgugcuuuaUC-CCGAacUGACC-GGCGGg -3'
miRNA:   3'- -CGACCGGC----------AGuGGCU--ACUGGgCCGUU- -5'
22426 5' -59.6 NC_005056.1 + 8307 0.68 0.238609
Target:  5'- uGCaGGCCGggCGCUGGUGcaaCCGGCGc -3'
miRNA:   3'- -CGaCCGGCa-GUGGCUACug-GGCCGUu -5'
22426 5' -59.6 NC_005056.1 + 7459 0.68 0.238609
Target:  5'- cGCUGaCCGUaACCGGc-ACCCGGCAGg -3'
miRNA:   3'- -CGACcGGCAgUGGCUacUGGGCCGUU- -5'
22426 5' -59.6 NC_005056.1 + 2387 0.69 0.2203
Target:  5'- gGCUGGUugaCGUUgaccugACCGGUGACCCgauuguccugGGCAAu -3'
miRNA:   3'- -CGACCG---GCAG------UGGCUACUGGG----------CCGUU- -5'
22426 5' -59.6 NC_005056.1 + 16706 0.69 0.20877
Target:  5'- uGCUGGCCGaCA-CGAUGGCUgaGGCGc -3'
miRNA:   3'- -CGACCGGCaGUgGCUACUGGg-CCGUu -5'
22426 5' -59.6 NC_005056.1 + 10408 0.76 0.063226
Target:  5'- gGCUGGCCGgUAUCGGUGugCUGGCc- -3'
miRNA:   3'- -CGACCGGCaGUGGCUACugGGCCGuu -5'
22426 5' -59.6 NC_005056.1 + 20709 0.77 0.056194
Target:  5'- gGCgUGGCCGUUGCUgGAUGGCaCCGGCAu -3'
miRNA:   3'- -CG-ACCGGCAGUGG-CUACUG-GGCCGUu -5'
22426 5' -59.6 NC_005056.1 + 3535 1.07 0.000222
Target:  5'- gGCUGGCCGUCACCGAUGACCCGGCAAg -3'
miRNA:   3'- -CGACCGGCAGUGGCUACUGGGCCGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.