miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22427 5' -49.6 NC_005056.1 + 16887 0.66 0.880237
Target:  5'- gGCC-GGAAAACuGUauaUCGACUACGa -3'
miRNA:   3'- gCGGaCUUUUUGuCAg--AGCUGGUGUg -5'
22427 5' -49.6 NC_005056.1 + 6628 0.67 0.835485
Target:  5'- gGCgaGc---ACGGcCUCGACCACGCc -3'
miRNA:   3'- gCGgaCuuuuUGUCaGAGCUGGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 27547 0.67 0.825739
Target:  5'- uGCCUG-AAAACGGUUUCGcGCgGCu- -3'
miRNA:   3'- gCGGACuUUUUGUCAGAGC-UGgUGug -5'
22427 5' -49.6 NC_005056.1 + 5788 0.67 0.825739
Target:  5'- aCGCCUGccuGACAGUCgagcugUG-UCGCACg -3'
miRNA:   3'- -GCGGACuuuUUGUCAGa-----GCuGGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 25396 0.67 0.815754
Target:  5'- -uCCUGAcuGAGCAG-CUCGAcuaucuCCACGCg -3'
miRNA:   3'- gcGGACUu-UUUGUCaGAGCU------GGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 12425 0.69 0.728872
Target:  5'- aCGCC--GAAAGCGGUUaaGGCCGCAUa -3'
miRNA:   3'- -GCGGacUUUUUGUCAGagCUGGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 20360 0.7 0.670412
Target:  5'- gCGCCgGGGAcACAG-CUUGACCGC-Ca -3'
miRNA:   3'- -GCGGaCUUUuUGUCaGAGCUGGUGuG- -5'
22427 5' -49.6 NC_005056.1 + 5470 0.72 0.51727
Target:  5'- uGcCCUGAAGuACGGUCU-GACCAUGCc -3'
miRNA:   3'- gC-GGACUUUuUGUCAGAgCUGGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 703 0.73 0.483573
Target:  5'- uGCCUGGcuGAAugAG--UCGGCCACGCu -3'
miRNA:   3'- gCGGACU--UUUugUCagAGCUGGUGUG- -5'
22427 5' -49.6 NC_005056.1 + 3920 1.1 0.001698
Target:  5'- cCGCCUGAAAAACAGUCUCGACCACACc -3'
miRNA:   3'- -GCGGACUUUUUGUCAGAGCUGGUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.