miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22428 5' -55.8 NC_005056.1 + 18153 0.66 0.500233
Target:  5'- cGGUcAGGCaUCccguauugagggauuCCGCaAGACCAGUGCa -3'
miRNA:   3'- aCCAaUUCG-AGc--------------GGCG-UCUGGUCGCG- -5'
22428 5' -55.8 NC_005056.1 + 16511 0.66 0.488407
Target:  5'- cUGGUcGAuuUUaGCgCGCAGACCcAGCGCa -3'
miRNA:   3'- -ACCAaUUcgAG-CG-GCGUCUGG-UCGCG- -5'
22428 5' -55.8 NC_005056.1 + 6583 0.66 0.487338
Target:  5'- aGGccguGCUCGCCGCaaauccgGGACUGGCu- -3'
miRNA:   3'- aCCaauuCGAGCGGCG-------UCUGGUCGcg -5'
22428 5' -55.8 NC_005056.1 + 4579 0.67 0.460995
Target:  5'- cGGUc-GGCUgGCUGCAGaaauaccgcaaugaaGCCccGGCGCg -3'
miRNA:   3'- aCCAauUCGAgCGGCGUC---------------UGG--UCGCG- -5'
22428 5' -55.8 NC_005056.1 + 9515 0.67 0.446576
Target:  5'- cGGUc--GCU-GCCguguGCAGACCGGCGg -3'
miRNA:   3'- aCCAauuCGAgCGG----CGUCUGGUCGCg -5'
22428 5' -55.8 NC_005056.1 + 5752 0.67 0.426422
Target:  5'- aGG-UGAGCcagCGCCcgGCGGcaucACCAGCGUc -3'
miRNA:   3'- aCCaAUUCGa--GCGG--CGUC----UGGUCGCG- -5'
22428 5' -55.8 NC_005056.1 + 10078 0.68 0.39723
Target:  5'- cGGUUGuGC-CGCCGCuGucGCCGGgGUg -3'
miRNA:   3'- aCCAAUuCGaGCGGCGuC--UGGUCgCG- -5'
22428 5' -55.8 NC_005056.1 + 17237 0.69 0.360365
Target:  5'- cUGG--GAGCUuuaCGCCGCA-ACCGGUGUg -3'
miRNA:   3'- -ACCaaUUCGA---GCGGCGUcUGGUCGCG- -5'
22428 5' -55.8 NC_005056.1 + 10185 0.7 0.28421
Target:  5'- cGGUUcguugcuGGCgucaaugauugaccaGCCGCAGACCccGGCGCu -3'
miRNA:   3'- aCCAAu------UCGag-------------CGGCGUCUGG--UCGCG- -5'
22428 5' -55.8 NC_005056.1 + 5255 1.12 0.000229
Target:  5'- cUGGUUAAGCUCGCCGCAGACCAGCGCa -3'
miRNA:   3'- -ACCAAUUCGAGCGGCGUCUGGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.