miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22429 3' -55.8 NC_005056.1 + 1591 0.67 0.486808
Target:  5'- aCGUUGUauuuuuCGGUGAGUUUGcGGAUGgauUCCg -3'
miRNA:   3'- -GCGACG------GCCACUCAGACaCCUAU---GGG- -5'
22429 3' -55.8 NC_005056.1 + 18587 0.69 0.387445
Target:  5'- gCGCUGCCGGUGuGg----GGAUugCg -3'
miRNA:   3'- -GCGACGGCCACuCagacaCCUAugGg -5'
22429 3' -55.8 NC_005056.1 + 7637 0.7 0.302383
Target:  5'- gGUUGCCGGUGGuGUCggcGUGuAUGCCa -3'
miRNA:   3'- gCGACGGCCACU-CAGa--CACcUAUGGg -5'
22429 3' -55.8 NC_005056.1 + 1366 0.71 0.287199
Target:  5'- cCGCUGCUGGUcauGGUCuUGcGGAUAgCCa -3'
miRNA:   3'- -GCGACGGCCAc--UCAG-ACaCCUAUgGG- -5'
22429 3' -55.8 NC_005056.1 + 5565 1.13 0.000234
Target:  5'- aCGCUGCCGGUGAGUCUGUGGAUACCCg -3'
miRNA:   3'- -GCGACGGCCACUCAGACACCUAUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.