Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 6615 | 0.67 | 0.733628 |
|
Target: 5'- gCCUGCUGCccGggGUCUUuaCCGUggaCGCa -3' miRNA: 3'- -GGACGAUGa-CaaCAGAA--GGCAg--GCGg -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 5379 | 0.69 | 0.620312 |
|
Target: 5'- uCCUGCUggugcugaagcGCUGccgGUCUUCgcccugcgCGUCgGCCa -3' miRNA: 3'- -GGACGA-----------UGACaa-CAGAAG--------GCAGgCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 18558 | 0.69 | 0.583729 |
|
Target: 5'- aCCUG-UGCUGccaggg-CCGUCCGCCg -3' miRNA: 3'- -GGACgAUGACaacagaaGGCAGGCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 27927 | 0.69 | 0.57464 |
|
Target: 5'- cUCUGCcucuccACUGgucauucaGUCguagCCGUCCGCCg -3' miRNA: 3'- -GGACGa-----UGACaa------CAGaa--GGCAGGCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 2201 | 0.7 | 0.518758 |
|
Target: 5'- uCCUcCUGCUGUUGcUCcUCCGUCgGUa -3' miRNA: 3'- -GGAcGAUGACAAC-AGaAGGCAGgCGg -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 8371 | 0.71 | 0.496995 |
|
Target: 5'- aUCUGCgcgaUGUUGUCaucaagcUCCGaCCGCCg -3' miRNA: 3'- -GGACGaug-ACAACAGa------AGGCaGGCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 26808 | 0.73 | 0.367516 |
|
Target: 5'- aCC-GCUGCUGUUG-CUgCCG-CUGCCg -3' miRNA: 3'- -GGaCGAUGACAACaGAaGGCaGGCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 15115 | 0.75 | 0.292472 |
|
Target: 5'- gCUGCcACUGUUGUUg-CCG-CCGCCu -3' miRNA: 3'- gGACGaUGACAACAGaaGGCaGGCGG- -5' |
|||||||
| 2243 | 3' | -52.3 | NC_001405.1 | + | 2103 | 1.13 | 0.000655 |
|
Target: 5'- gCCUGCUACUGUUGUCUUCCGUCCGCCc -3' miRNA: 3'- -GGACGAUGACAACAGAAGGCAGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home