miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2243 5' -56.9 NC_001405.1 + 18619 0.66 0.538777
Target:  5'- aCGGCGGAcggcccuGGcAGCAcaGguuucugcuggguguCAGCGGGGGGAg -3'
miRNA:   3'- gGCUGCCU-------CC-UCGU--U---------------GUCGUCCUCCU- -5'
2243 5' -56.9 NC_001405.1 + 26738 0.66 0.492927
Target:  5'- aCCGGCGGcAGcGGCAGCGGCAGc---- -3'
miRNA:   3'- -GGCUGCC-UCcUCGUUGUCGUCcuccu -5'
2243 5' -56.9 NC_001405.1 + 9559 0.67 0.472214
Target:  5'- uUGGCGG-GGGGCugccguGCGGCAGGGa-- -3'
miRNA:   3'- gGCUGCCuCCUCGu-----UGUCGUCCUccu -5'
2243 5' -56.9 NC_001405.1 + 2168 0.67 0.462024
Target:  5'- gCCaGGCGGc--GGCGGCGGCAGGAGc- -3'
miRNA:   3'- -GG-CUGCCuccUCGUUGUCGUCCUCcu -5'
2243 5' -56.9 NC_001405.1 + 33286 0.67 0.462024
Target:  5'- -gGACGGAGcGGCGGCGGCAGcAGu- -3'
miRNA:   3'- ggCUGCCUCcUCGUUGUCGUCcUCcu -5'
2243 5' -56.9 NC_001405.1 + 14304 0.67 0.432171
Target:  5'- aCCG-CGGAGGcacaAACGGCGGGuccagGGGAg -3'
miRNA:   3'- -GGCuGCCUCCucg-UUGUCGUCC-----UCCU- -5'
2243 5' -56.9 NC_001405.1 + 12182 0.68 0.419589
Target:  5'- gCUGGCGGuGGcacccgcgcgcgcuGGCAacgucgGCGGCGuGGAGGAa -3'
miRNA:   3'- -GGCUGCCuCC--------------UCGU------UGUCGU-CCUCCU- -5'
2243 5' -56.9 NC_001405.1 + 9726 0.68 0.385027
Target:  5'- aCCGugGc--GGGCGGCAGCGGGuGGc -3'
miRNA:   3'- -GGCugCcucCUCGUUGUCGUCCuCCu -5'
2243 5' -56.9 NC_001405.1 + 13948 0.73 0.195876
Target:  5'- gUGugGGAGGAcgaugacucggcaGCGACAGCagcguccuggauuuGGGAGGGa -3'
miRNA:   3'- gGCugCCUCCU-------------CGUUGUCG--------------UCCUCCU- -5'
2243 5' -56.9 NC_001405.1 + 26232 0.73 0.177508
Target:  5'- cCCG-CGGcugcugauAGGGcuGCGGCGGCGGGGGGAu -3'
miRNA:   3'- -GGCuGCC--------UCCU--CGUUGUCGUCCUCCU- -5'
2243 5' -56.9 NC_001405.1 + 5862 0.73 0.177508
Target:  5'- -aGugGGAGGGGUAGCGGUcguuguccacuAGGGGGu -3'
miRNA:   3'- ggCugCCUCCUCGUUGUCG-----------UCCUCCu -5'
2243 5' -56.9 NC_001405.1 + 26832 0.75 0.142086
Target:  5'- gCGGCGGc--AGCAGCAGgAGGAGGAg -3'
miRNA:   3'- gGCUGCCuccUCGUUGUCgUCCUCCU- -5'
2243 5' -56.9 NC_001405.1 + 2140 1.11 0.000293
Target:  5'- aCCGACGGAGGAGCAACAGCAGGAGGAa -3'
miRNA:   3'- -GGCUGCCUCCUCGUUGUCGUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.