Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22430 | 5' | -53.3 | NC_005056.1 | + | 5850 | 1.12 | 0.00064 |
Target: 5'- gCGUGACACCGGCAAAACGUGGACGCCc -3' miRNA: 3'- -GCACUGUGGCCGUUUUGCACCUGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 17300 | 0.82 | 0.083697 |
Target: 5'- gCGUGACgauACCGGCGAAACGgUGGcCGUCg -3' miRNA: 3'- -GCACUG---UGGCCGUUUUGC-ACCuGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 5613 | 0.78 | 0.163724 |
Target: 5'- --aGACucACCGGCA--GCGUGGGCGCg -3' miRNA: 3'- gcaCUG--UGGCCGUuuUGCACCUGCGg -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 7460 | 0.71 | 0.421942 |
Target: 5'- aCGcUGACcguaACCGGCAcc-CGgcagGGACGCCc -3' miRNA: 3'- -GC-ACUG----UGGCCGUuuuGCa---CCUGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 7554 | 0.7 | 0.438898 |
Target: 5'- -cUGGCACUGucccugauuuacccGCAGAGCGUGGcCGUCa -3' miRNA: 3'- gcACUGUGGC--------------CGUUUUGCACCuGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 4366 | 0.7 | 0.451099 |
Target: 5'- gGUGcCACCGGCGGugucgguggugcuGGCGaUGGA-GCCg -3' miRNA: 3'- gCACuGUGGCCGUU-------------UUGC-ACCUgCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 3977 | 0.7 | 0.462444 |
Target: 5'- --aGcCACCGGCGGuGGCGUG-ACGCCc -3' miRNA: 3'- gcaCuGUGGCCGUU-UUGCACcUGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 17818 | 0.7 | 0.481327 |
Target: 5'- uGUGGCGCUGGCcgguAAgGUGGucgguuuuuuguCGCCg -3' miRNA: 3'- gCACUGUGGCCGuu--UUgCACCu-----------GCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 7094 | 0.69 | 0.504899 |
Target: 5'- aCGUGAuaguCACCGGacuGGACG-GGAaGCCg -3' miRNA: 3'- -GCACU----GUGGCCgu-UUUGCaCCUgCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 26250 | 0.69 | 0.548947 |
Target: 5'- --aGGCACCGGUAAGGCGUuuaccGG-UGCUu -3' miRNA: 3'- gcaCUGUGGCCGUUUUGCA-----CCuGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 1747 | 0.69 | 0.548947 |
Target: 5'- -cUGGUACUGGCAccGCcgGUGGugGCCg -3' miRNA: 3'- gcACUGUGGCCGUuuUG--CACCugCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 28380 | 0.68 | 0.58275 |
Target: 5'- --aGGCGCUGGC---GCGUGGcGCGaCCg -3' miRNA: 3'- gcaCUGUGGCCGuuuUGCACC-UGC-GG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 4975 | 0.68 | 0.59298 |
Target: 5'- uCGUGAugagcaucgcaucCGCCGGgAAGuACG-GGACGCg -3' miRNA: 3'- -GCACU-------------GUGGCCgUUU-UGCaCCUGCGg -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 5683 | 0.68 | 0.594119 |
Target: 5'- gCGUGACGCUGGUGAugcCGccGGuGCGCUg -3' miRNA: 3'- -GCACUGUGGCCGUUuu-GCa-CC-UGCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 28909 | 0.68 | 0.594119 |
Target: 5'- cCGUG-CACa-GCAAAACG-GGugGCUu -3' miRNA: 3'- -GCACuGUGgcCGUUUUGCaCCugCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 11560 | 0.67 | 0.628393 |
Target: 5'- --cGGCGcaauCCGGCGuGugGUGGA-GCCg -3' miRNA: 3'- gcaCUGU----GGCCGUuUugCACCUgCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 26288 | 0.66 | 0.674087 |
Target: 5'- gGUGcCugCGGCAAaugcuGACGgagGGAcaaaaCGCCc -3' miRNA: 3'- gCACuGugGCCGUU-----UUGCa--CCU-----GCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 19792 | 0.66 | 0.685433 |
Target: 5'- --cGAUuagcugGCCGGUuguugcCGUGGugGCCg -3' miRNA: 3'- gcaCUG------UGGCCGuuuu--GCACCugCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 8118 | 0.66 | 0.685433 |
Target: 5'- gGUGGCACUGcGUcaGGAAC-UGGAgaaCGCCg -3' miRNA: 3'- gCACUGUGGC-CG--UUUUGcACCU---GCGG- -5' |
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22430 | 5' | -53.3 | NC_005056.1 | + | 4060 | 0.66 | 0.685433 |
Target: 5'- -cUGACGCCGGUcagcAGuuCGUcaucaGGGCGUCa -3' miRNA: 3'- gcACUGUGGCCG----UUuuGCA-----CCUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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