miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22431 5' -55.3 NC_005056.1 + 8303 0.66 0.578844
Target:  5'- ---gGCCgGGCGCUGgugcaACCGGCG-Ca -3'
miRNA:   3'- uuagUGGaCUGCGACa----UGGCCGCaGg -5'
22431 5' -55.3 NC_005056.1 + 12538 0.66 0.578844
Target:  5'- ---gGCCUuuucGCGCgGUGgUGGCGUCCu -3'
miRNA:   3'- uuagUGGAc---UGCGaCAUgGCCGCAGG- -5'
22431 5' -55.3 NC_005056.1 + 16739 0.66 0.578844
Target:  5'- --gCACCUG-CGCgGUGCgGGUGUa- -3'
miRNA:   3'- uuaGUGGACuGCGaCAUGgCCGCAgg -5'
22431 5' -55.3 NC_005056.1 + 1757 0.66 0.522883
Target:  5'- --gCGCCgGAUGCUgGUACUGGCaccgCCg -3'
miRNA:   3'- uuaGUGGaCUGCGA-CAUGGCCGca--GG- -5'
22431 5' -55.3 NC_005056.1 + 5664 0.67 0.497829
Target:  5'- aAAUCACCggucuguuucugcgUGACGCUGgugaugccGCCGGUGcgCUg -3'
miRNA:   3'- -UUAGUGG--------------ACUGCGACa-------UGGCCGCa-GG- -5'
22431 5' -55.3 NC_005056.1 + 3996 0.68 0.438263
Target:  5'- --aCGcCCUGAugacgaacUGCUG-ACCGGCGUCa -3'
miRNA:   3'- uuaGU-GGACU--------GCGACaUGGCCGCAGg -5'
22431 5' -55.3 NC_005056.1 + 8762 0.68 0.438263
Target:  5'- cAUCAgCCUGAUGCUG-ACCGaGCG-Ca -3'
miRNA:   3'- uUAGU-GGACUGCGACaUGGC-CGCaGg -5'
22431 5' -55.3 NC_005056.1 + 4380 0.68 0.428235
Target:  5'- -uUCGgCUGACGCUcgGUgccACCGGCGgugUCg -3'
miRNA:   3'- uuAGUgGACUGCGA--CA---UGGCCGCa--GG- -5'
22431 5' -55.3 NC_005056.1 + 20620 0.69 0.398986
Target:  5'- ---aACaUGACGCUG-GCCGGCGUgCu -3'
miRNA:   3'- uuagUGgACUGCGACaUGGCCGCAgG- -5'
22431 5' -55.3 NC_005056.1 + 8234 0.7 0.344474
Target:  5'- ---uGCCUGAUGCUGUgcGCCGGUugcaCCa -3'
miRNA:   3'- uuagUGGACUGCGACA--UGGCCGca--GG- -5'
22431 5' -55.3 NC_005056.1 + 7537 0.72 0.25216
Target:  5'- uGUCG-CUGGCGCUGaUGCUGGCacuGUCCc -3'
miRNA:   3'- uUAGUgGACUGCGAC-AUGGCCG---CAGG- -5'
22431 5' -55.3 NC_005056.1 + 5214 0.72 0.245464
Target:  5'- cAUCAUgUGGCGCUGUGCgGGacuCGUCa -3'
miRNA:   3'- uUAGUGgACUGCGACAUGgCC---GCAGg -5'
22431 5' -55.3 NC_005056.1 + 19645 0.77 0.121236
Target:  5'- --gCGCaCUGGCGCUG-ACUGGCGUCa -3'
miRNA:   3'- uuaGUG-GACUGCGACaUGGCCGCAGg -5'
22431 5' -55.3 NC_005056.1 + 5944 1.1 0.000381
Target:  5'- gAAUCACCUGACGCUGUACCGGCGUCCa -3'
miRNA:   3'- -UUAGUGGACUGCGACAUGGCCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.