Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22432 | 3' | -58.1 | NC_005056.1 | + | 19776 | 0.66 | 0.371678 |
Target: 5'- cCCCauugcGCCUGCugccgcgaugaugGCAuuGAUGCCGGUGAUa -3' miRNA: 3'- -GGGc----CGGACG-------------UGU--CUGCGGUCACUAa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 7993 | 0.67 | 0.358361 |
Target: 5'- gCCaGCCUGCGCgccucgcuGGAcagggugaacaacguCGCCAGUGAa- -3' miRNA: 3'- gGGcCGGACGUG--------UCU---------------GCGGUCACUaa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 19665 | 0.67 | 0.354867 |
Target: 5'- --aGGCCgaugGUu--GACGCCAGUGAUUu -3' miRNA: 3'- gggCCGGa---CGuguCUGCGGUCACUAA- -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 8456 | 0.68 | 0.282676 |
Target: 5'- aCCCGacaGCCUGCGCAgGGCGCUgacUGAUg -3' miRNA: 3'- -GGGC---CGGACGUGU-CUGCGGuc-ACUAa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 2061 | 0.69 | 0.247857 |
Target: 5'- gCCGGaggucuucUCUGUGCGGACgGCCAGUGGc- -3' miRNA: 3'- gGGCC--------GGACGUGUCUG-CGGUCACUaa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 4116 | 0.7 | 0.216663 |
Target: 5'- uCCCGuguuGCCgaacugaacgGCAUcGACGCCGGUGAUg -3' miRNA: 3'- -GGGC----CGGa---------CGUGuCUGCGGUCACUAa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 5669 | 0.74 | 0.113332 |
Target: 5'- aCCGGUCUGUuucuGCGuGACGCUGGUGAUg -3' miRNA: 3'- gGGCCGGACG----UGU-CUGCGGUCACUAa -5' |
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22432 | 3' | -58.1 | NC_005056.1 | + | 8264 | 1.07 | 0.000306 |
Target: 5'- gCCCGGCCUGCACAGACGCCAGUGAUUg -3' miRNA: 3'- -GGGCCGGACGUGUCUGCGGUCACUAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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