miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22433 5' -58.7 NC_005056.1 + 5599 0.66 0.420545
Target:  5'- cGugGGCGCGCauggCCgcaaGCGCCACcUCc -3'
miRNA:   3'- cCugCCGUGUG----GGaug-CGCGGUGcAG- -5'
22433 5' -58.7 NC_005056.1 + 18033 0.66 0.383437
Target:  5'- cGcCGGaGCGCCUUuuCGCGCCAUGUg -3'
miRNA:   3'- cCuGCCgUGUGGGAu-GCGCGGUGCAg -5'
22433 5' -58.7 NC_005056.1 + 9563 0.67 0.365716
Target:  5'- --gUGGCugACCCauCGCGCCggGCGUUc -3'
miRNA:   3'- ccuGCCGugUGGGauGCGCGG--UGCAG- -5'
22433 5' -58.7 NC_005056.1 + 5737 0.67 0.348568
Target:  5'- cGGCGGCAuCACCa---GCGUCACG-Ca -3'
miRNA:   3'- cCUGCCGU-GUGGgaugCGCGGUGCaG- -5'
22433 5' -58.7 NC_005056.1 + 27826 0.67 0.340212
Target:  5'- cGGCGGCGCgugcaGCCUcgACGCGUU-CGUCa -3'
miRNA:   3'- cCUGCCGUG-----UGGGa-UGCGCGGuGCAG- -5'
22433 5' -58.7 NC_005056.1 + 4574 0.67 0.332002
Target:  5'- aGGuuuCGGCACGCCUcACGCcguuaaaaccgGCCAUGa- -3'
miRNA:   3'- -CCu--GCCGUGUGGGaUGCG-----------CGGUGCag -5'
22433 5' -58.7 NC_005056.1 + 1337 0.67 0.323939
Target:  5'- -uGCGGCugGCCUcAUaggugGCGCUGCGUCc -3'
miRNA:   3'- ccUGCCGugUGGGaUG-----CGCGGUGCAG- -5'
22433 5' -58.7 NC_005056.1 + 20251 0.68 0.300629
Target:  5'- uGGCGGCAUuaguCCUUGCGgCGgUCugGUCa -3'
miRNA:   3'- cCUGCCGUGu---GGGAUGC-GC-GGugCAG- -5'
22433 5' -58.7 NC_005056.1 + 8525 0.68 0.278635
Target:  5'- uGACGGCaucagucaGCGCCCUGCGCaGgC-UGUCg -3'
miRNA:   3'- cCUGCCG--------UGUGGGAUGCG-CgGuGCAG- -5'
22433 5' -58.7 NC_005056.1 + 20796 0.69 0.249374
Target:  5'- aGACGGCACACCCcggaaaauugauuuUACGuUGUCGC-UCa -3'
miRNA:   3'- cCUGCCGUGUGGG--------------AUGC-GCGGUGcAG- -5'
22433 5' -58.7 NC_005056.1 + 7348 0.7 0.232328
Target:  5'- cGGGCGGgACGCauugaGCGCGCCAUuUCa -3'
miRNA:   3'- -CCUGCCgUGUGgga--UGCGCGGUGcAG- -5'
22433 5' -58.7 NC_005056.1 + 21296 0.7 0.208889
Target:  5'- cGGAUGGUgaccACAUCCgGCGCGCCcCGg- -3'
miRNA:   3'- -CCUGCCG----UGUGGGaUGCGCGGuGCag -5'
22433 5' -58.7 NC_005056.1 + 9049 1.12 0.000148
Target:  5'- cGGACGGCACACCCUACGCGCCACGUCa -3'
miRNA:   3'- -CCUGCCGUGUGGGAUGCGCGGUGCAG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.