Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22433 | 5' | -58.7 | NC_005056.1 | + | 5599 | 0.66 | 0.420545 |
Target: 5'- cGugGGCGCGCauggCCgcaaGCGCCACcUCc -3' miRNA: 3'- cCugCCGUGUG----GGaug-CGCGGUGcAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 18033 | 0.66 | 0.383437 |
Target: 5'- cGcCGGaGCGCCUUuuCGCGCCAUGUg -3' miRNA: 3'- cCuGCCgUGUGGGAu-GCGCGGUGCAg -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 9563 | 0.67 | 0.365716 |
Target: 5'- --gUGGCugACCCauCGCGCCggGCGUUc -3' miRNA: 3'- ccuGCCGugUGGGauGCGCGG--UGCAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 5737 | 0.67 | 0.348568 |
Target: 5'- cGGCGGCAuCACCa---GCGUCACG-Ca -3' miRNA: 3'- cCUGCCGU-GUGGgaugCGCGGUGCaG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 27826 | 0.67 | 0.340212 |
Target: 5'- cGGCGGCGCgugcaGCCUcgACGCGUU-CGUCa -3' miRNA: 3'- cCUGCCGUG-----UGGGa-UGCGCGGuGCAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 4574 | 0.67 | 0.332002 |
Target: 5'- aGGuuuCGGCACGCCUcACGCcguuaaaaccgGCCAUGa- -3' miRNA: 3'- -CCu--GCCGUGUGGGaUGCG-----------CGGUGCag -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 1337 | 0.67 | 0.323939 |
Target: 5'- -uGCGGCugGCCUcAUaggugGCGCUGCGUCc -3' miRNA: 3'- ccUGCCGugUGGGaUG-----CGCGGUGCAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 20251 | 0.68 | 0.300629 |
Target: 5'- uGGCGGCAUuaguCCUUGCGgCGgUCugGUCa -3' miRNA: 3'- cCUGCCGUGu---GGGAUGC-GC-GGugCAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 8525 | 0.68 | 0.278635 |
Target: 5'- uGACGGCaucagucaGCGCCCUGCGCaGgC-UGUCg -3' miRNA: 3'- cCUGCCG--------UGUGGGAUGCG-CgGuGCAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 20796 | 0.69 | 0.249374 |
Target: 5'- aGACGGCACACCCcggaaaauugauuuUACGuUGUCGC-UCa -3' miRNA: 3'- cCUGCCGUGUGGG--------------AUGC-GCGGUGcAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 7348 | 0.7 | 0.232328 |
Target: 5'- cGGGCGGgACGCauugaGCGCGCCAUuUCa -3' miRNA: 3'- -CCUGCCgUGUGgga--UGCGCGGUGcAG- -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 21296 | 0.7 | 0.208889 |
Target: 5'- cGGAUGGUgaccACAUCCgGCGCGCCcCGg- -3' miRNA: 3'- -CCUGCCG----UGUGGGaUGCGCGGuGCag -5' |
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22433 | 5' | -58.7 | NC_005056.1 | + | 9049 | 1.12 | 0.000148 |
Target: 5'- cGGACGGCACACCCUACGCGCCACGUCa -3' miRNA: 3'- -CCUGCCGUGUGGGAUGCGCGGUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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