Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 18563 | 0.66 | 0.514457 |
|
Target: 5'- uGGCCggaacUAugGCCucaguGGgCGCUGCCGg- -3' miRNA: 3'- gCUGGa----AUugCGG-----CCaGCGACGGCac -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 5549 | 0.66 | 0.514457 |
|
Target: 5'- gCGGCCaUgcGCGCCca-CGCUGCCGg- -3' miRNA: 3'- -GCUGG-AauUGCGGccaGCGACGGCac -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 17211 | 0.67 | 0.427968 |
|
Target: 5'- aGGCCgaggucuaCCGGUgCGCUGCCGUu -3' miRNA: 3'- gCUGGaauugc--GGCCA-GCGACGGCAc -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 8630 | 0.68 | 0.375312 |
|
Target: 5'- uGACCUgcucauugUGCCGGU-GCUGgCGUGg -3' miRNA: 3'- gCUGGAauu-----GCGGCCAgCGACgGCAC- -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 1343 | 0.68 | 0.366381 |
|
Target: 5'- uGGCCUcauaggUGGCGCUGcGUcCGCUGCUGg- -3' miRNA: 3'- gCUGGA------AUUGCGGC-CA-GCGACGGCac -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 7794 | 0.79 | 0.074289 |
|
Target: 5'- gCGACgUUuaucuCGCUGGUCGCUGCCGg- -3' miRNA: 3'- -GCUGgAAuu---GCGGCCAGCGACGGCac -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 19779 | 0.79 | 0.070032 |
|
Target: 5'- aCGGCCaucggggcgaUUAGCugGCCGGUUGUUGCCGUGg -3' miRNA: 3'- -GCUGG----------AAUUG--CGGCCAGCGACGGCAC- -5' |
|||||||
| 22434 | 3' | -56.6 | NC_005056.1 | + | 9502 | 1.08 | 0.000477 |
|
Target: 5'- cCGACCUUAACGCCGGUCGCUGCCGUGu -3' miRNA: 3'- -GCUGGAAUUGCGGCCAGCGACGGCAC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home