Results 1 - 12 of 12 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22434 | 5' | -54 | NC_005056.1 | + | 3956 | 0.66 | 0.612353 |
Target: 5'- aGGCggGUGaauGCCuGACUGGUUUCAu-- -3' miRNA: 3'- -CCGuaCACg--UGG-CUGACCGAAGUcac -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 4371 | 0.67 | 0.566235 |
Target: 5'- cGCucgGUGcCACCGGC-GGUgUCGGUGg -3' miRNA: 3'- cCGua-CAC-GUGGCUGaCCGaAGUCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 5856 | 0.67 | 0.521058 |
Target: 5'- uGGCcgcuuUGgGCugCGGCUccGGCUUCGGUu -3' miRNA: 3'- -CCGu----ACaCGugGCUGA--CCGAAGUCAc -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 5670 | 0.67 | 0.521058 |
Target: 5'- aGGCAUGUcUGCCG--UGGCggUCAGUGc -3' miRNA: 3'- -CCGUACAcGUGGCugACCGa-AGUCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 20280 | 0.68 | 0.498994 |
Target: 5'- aGCcgGUcacgGCACCGGCUGGCcgcUCuuauGUGg -3' miRNA: 3'- cCGuaCA----CGUGGCUGACCGa--AGu---CAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 10187 | 0.68 | 0.487037 |
Target: 5'- cGGCGUGcGCaggauaucGCCGAuacuCUGGCUgauaugcucaaggUCAGUGa -3' miRNA: 3'- -CCGUACaCG--------UGGCU----GACCGA-------------AGUCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 607 | 0.68 | 0.477355 |
Target: 5'- cGGCAUGUGCGCCGuuuucguaauACUuGCggCGGa- -3' miRNA: 3'- -CCGUACACGUGGC----------UGAcCGaaGUCac -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 18838 | 0.68 | 0.463541 |
Target: 5'- cGCAaugauaaucUGUGCACCGGCUgcaucauccgccgaGGCggCAGUa -3' miRNA: 3'- cCGU---------ACACGUGGCUGA--------------CCGaaGUCAc -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 15810 | 0.7 | 0.395922 |
Target: 5'- gGGCA-GUGCAUgagacgcuauuUGAcCUGGCUggUCAGUGg -3' miRNA: 3'- -CCGUaCACGUG-----------GCU-GACCGA--AGUCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 1316 | 0.7 | 0.394003 |
Target: 5'- cGGCGUGgcuggcuuccucGCugCGGCUGGCcUCauaGGUGg -3' miRNA: 3'- -CCGUACa-----------CGugGCUGACCGaAG---UCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 19643 | 0.76 | 0.167702 |
Target: 5'- uGGCGcacUG-GCGCUGACUGGCgucaUCGGUGc -3' miRNA: 3'- -CCGU---ACaCGUGGCUGACCGa---AGUCAC- -5' |
|||||||
22434 | 5' | -54 | NC_005056.1 | + | 9539 | 1.12 | 0.000377 |
Target: 5'- cGGCAUGUGCACCGACUGGCUUCAGUGg -3' miRNA: 3'- -CCGUACACGUGGCUGACCGAAGUCAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home