miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22434 5' -54 NC_005056.1 + 3956 0.66 0.612353
Target:  5'- aGGCggGUGaauGCCuGACUGGUUUCAu-- -3'
miRNA:   3'- -CCGuaCACg--UGG-CUGACCGAAGUcac -5'
22434 5' -54 NC_005056.1 + 4371 0.67 0.566235
Target:  5'- cGCucgGUGcCACCGGC-GGUgUCGGUGg -3'
miRNA:   3'- cCGua-CAC-GUGGCUGaCCGaAGUCAC- -5'
22434 5' -54 NC_005056.1 + 5670 0.67 0.521058
Target:  5'- aGGCAUGUcUGCCG--UGGCggUCAGUGc -3'
miRNA:   3'- -CCGUACAcGUGGCugACCGa-AGUCAC- -5'
22434 5' -54 NC_005056.1 + 5856 0.67 0.521058
Target:  5'- uGGCcgcuuUGgGCugCGGCUccGGCUUCGGUu -3'
miRNA:   3'- -CCGu----ACaCGugGCUGA--CCGAAGUCAc -5'
22434 5' -54 NC_005056.1 + 20280 0.68 0.498994
Target:  5'- aGCcgGUcacgGCACCGGCUGGCcgcUCuuauGUGg -3'
miRNA:   3'- cCGuaCA----CGUGGCUGACCGa--AGu---CAC- -5'
22434 5' -54 NC_005056.1 + 10187 0.68 0.487037
Target:  5'- cGGCGUGcGCaggauaucGCCGAuacuCUGGCUgauaugcucaaggUCAGUGa -3'
miRNA:   3'- -CCGUACaCG--------UGGCU----GACCGA-------------AGUCAC- -5'
22434 5' -54 NC_005056.1 + 607 0.68 0.477355
Target:  5'- cGGCAUGUGCGCCGuuuucguaauACUuGCggCGGa- -3'
miRNA:   3'- -CCGUACACGUGGC----------UGAcCGaaGUCac -5'
22434 5' -54 NC_005056.1 + 18838 0.68 0.463541
Target:  5'- cGCAaugauaaucUGUGCACCGGCUgcaucauccgccgaGGCggCAGUa -3'
miRNA:   3'- cCGU---------ACACGUGGCUGA--------------CCGaaGUCAc -5'
22434 5' -54 NC_005056.1 + 15810 0.7 0.395922
Target:  5'- gGGCA-GUGCAUgagacgcuauuUGAcCUGGCUggUCAGUGg -3'
miRNA:   3'- -CCGUaCACGUG-----------GCU-GACCGA--AGUCAC- -5'
22434 5' -54 NC_005056.1 + 1316 0.7 0.394003
Target:  5'- cGGCGUGgcuggcuuccucGCugCGGCUGGCcUCauaGGUGg -3'
miRNA:   3'- -CCGUACa-----------CGugGCUGACCGaAG---UCAC- -5'
22434 5' -54 NC_005056.1 + 19643 0.76 0.167702
Target:  5'- uGGCGcacUG-GCGCUGACUGGCgucaUCGGUGc -3'
miRNA:   3'- -CCGU---ACaCGUGGCUGACCGa---AGUCAC- -5'
22434 5' -54 NC_005056.1 + 9539 1.12 0.000377
Target:  5'- cGGCAUGUGCACCGACUGGCUUCAGUGg -3'
miRNA:   3'- -CCGUACACGUGGCUGACCGAAGUCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.