miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22435 5' -52.1 NC_005056.1 + 9907 1.09 0.001029
Target:  5'- aCAAACUGACUACCGGCACGCUGGAAGu -3'
miRNA:   3'- -GUUUGACUGAUGGCCGUGCGACCUUC- -5'
22435 5' -52.1 NC_005056.1 + 5434 0.73 0.349691
Target:  5'- -cGGCgauAUUGCCGGUGCGCUGGAGa -3'
miRNA:   3'- guUUGac-UGAUGGCCGUGCGACCUUc -5'
22435 5' -52.1 NC_005056.1 + 1879 0.73 0.349691
Target:  5'- gGAGCUGcaacGCUGCaUGGUcgacACGCUGGAAGa -3'
miRNA:   3'- gUUUGAC----UGAUG-GCCG----UGCGACCUUC- -5'
22435 5' -52.1 NC_005056.1 + 11894 0.68 0.580533
Target:  5'- aAAGCUGGC-AgCGGCAacCGCgccgGGAGGg -3'
miRNA:   3'- gUUUGACUGaUgGCCGU--GCGa---CCUUC- -5'
22435 5' -52.1 NC_005056.1 + 12750 0.66 0.731754
Target:  5'- uGAACgaGCUGgCGGCGgCGCUGGGc- -3'
miRNA:   3'- gUUUGacUGAUgGCCGU-GCGACCUuc -5'
22435 5' -52.1 NC_005056.1 + 5689 0.66 0.742967
Target:  5'- --cGCUGgugauGCcGCCGGUGCGCUGGc-- -3'
miRNA:   3'- guuUGAC-----UGaUGGCCGUGCGACCuuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.