miRNA: 3'- -CCGuuGGCGC-GGCC-CUCCCG--CCuuCC- -5'
miRNA: 3'- cCGUUGG---CGCGGCCCUcc-CGCCuuCC- -5'
miRNA: 3'- -CCGUUGGCGCGGCCCUCCCGCCUUCC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22436 | 5' | -61.7 | NC_005056.1 | + | 6023 | 0.66 | 0.302934 |
|
Target: 5'- aGGCucCCGUGuCCGGuGAGGGUacGGu-GGu -3' miRNA: 3'- -CCGuuGGCGC-GGCC-CUCCCG--CCuuCC- -5' |
|||||||
| 22436 | 5' | -61.7 | NC_005056.1 | + | 10273 | 0.66 | 0.281358 |
|
Target: 5'- uGCAACUcaaGCGCCGGGGucuGCGGcuGGu -3' miRNA: 3'- cCGUUGG---CGCGGCCCUcc-CGCCuuCC- -5' |
|||||||
| 22436 | 5' | -61.7 | NC_005056.1 | + | 11905 | 1.11 | 9.6e-05 |
|
Target: 5'- cGGCAACCGCGCCGGGAGGGCGGAAGGu -3' miRNA: 3'- -CCGUUGGCGCGGCCCUCCCGCCUUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home