Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 19768 | 0.66 | 0.375269 |
Target: 5'- cGCCUGcUgCCGcgaugauggcauuGAUGCCGGugAuaaccGGCCa -3' miRNA: 3'- aCGGAC-AgGGC-------------CUACGGCCugU-----CUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 6105 | 0.66 | 0.35868 |
Target: 5'- cGCCUG--CCGGuUGCgGGAU-GACCa -3' miRNA: 3'- aCGGACagGGCCuACGgCCUGuCUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 11811 | 0.66 | 0.350157 |
Target: 5'- aGCCgggaaUGUCCCGGGUaaUGuuCAGGCCa -3' miRNA: 3'- aCGG-----ACAGGGCCUAcgGCcuGUCUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 17532 | 0.67 | 0.333547 |
Target: 5'- gGCCUGUgauuuucaUCCGGucaGCCuGGCuGACCg -3' miRNA: 3'- aCGGACA--------GGGCCua-CGGcCUGuCUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 6646 | 0.69 | 0.23977 |
Target: 5'- aGCCaGUCCCGGAuuUGCgGcGAgCAcGGCCu -3' miRNA: 3'- aCGGaCAGGGCCU--ACGgC-CU-GU-CUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 8315 | 0.73 | 0.117602 |
Target: 5'- aGCCUuUgCCaGAUGCCGGGCAguGACCc -3' miRNA: 3'- aCGGAcAgGGcCUACGGCCUGU--CUGG- -5' |
|||||||
22437 | 3' | -59.2 | NC_005056.1 | + | 11973 | 1 | 0.001096 |
Target: 5'- uUG-CUGUCCCGGAUGCCGGACAGACCg -3' miRNA: 3'- -ACgGACAGGGCCUACGGCCUGUCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home