miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22437 3' -59.2 NC_005056.1 + 19768 0.66 0.375269
Target:  5'- cGCCUGcUgCCGcgaugauggcauuGAUGCCGGugAuaaccGGCCa -3'
miRNA:   3'- aCGGAC-AgGGC-------------CUACGGCCugU-----CUGG- -5'
22437 3' -59.2 NC_005056.1 + 6105 0.66 0.35868
Target:  5'- cGCCUG--CCGGuUGCgGGAU-GACCa -3'
miRNA:   3'- aCGGACagGGCCuACGgCCUGuCUGG- -5'
22437 3' -59.2 NC_005056.1 + 11811 0.66 0.350157
Target:  5'- aGCCgggaaUGUCCCGGGUaaUGuuCAGGCCa -3'
miRNA:   3'- aCGG-----ACAGGGCCUAcgGCcuGUCUGG- -5'
22437 3' -59.2 NC_005056.1 + 17532 0.67 0.333547
Target:  5'- gGCCUGUgauuuucaUCCGGucaGCCuGGCuGACCg -3'
miRNA:   3'- aCGGACA--------GGGCCua-CGGcCUGuCUGG- -5'
22437 3' -59.2 NC_005056.1 + 6646 0.69 0.23977
Target:  5'- aGCCaGUCCCGGAuuUGCgGcGAgCAcGGCCu -3'
miRNA:   3'- aCGGaCAGGGCCU--ACGgC-CU-GU-CUGG- -5'
22437 3' -59.2 NC_005056.1 + 8315 0.73 0.117602
Target:  5'- aGCCUuUgCCaGAUGCCGGGCAguGACCc -3'
miRNA:   3'- aCGGAcAgGGcCUACGGCCUGU--CUGG- -5'
22437 3' -59.2 NC_005056.1 + 11973 1 0.001096
Target:  5'- uUG-CUGUCCCGGAUGCCGGACAGACCg -3'
miRNA:   3'- -ACgGACAGGGCCUACGGCCUGUCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.