Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22438 | 3' | -60.8 | NC_005056.1 | + | 19802 | 0.66 | 0.325807 |
Target: 5'- gCACUGCCaACCGuCGUGaagauUGCCcccauugcgccuGCUGCCg -3' miRNA: 3'- -GUGGCGG-UGGC-GCAU-----ACGG------------UGGCGGg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 20078 | 0.66 | 0.317947 |
Target: 5'- gCACUGgCugaCGCGUugAUGCUGCCGCUUa -3' miRNA: 3'- -GUGGCgGug-GCGCA--UACGGUGGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 18535 | 0.66 | 0.302659 |
Target: 5'- aCACgCGCCAgCGCGUca--CGCUGCCg -3' miRNA: 3'- -GUG-GCGGUgGCGCAuacgGUGGCGGg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 23247 | 0.66 | 0.302659 |
Target: 5'- uGCCGCCACUgGCGgagGCCAa--CCCu -3' miRNA: 3'- gUGGCGGUGG-CGCauaCGGUggcGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 6888 | 0.66 | 0.295229 |
Target: 5'- uCACUGCCugCG-GUGUGCgGCaucgGCuCCa -3' miRNA: 3'- -GUGGCGGugGCgCAUACGgUGg---CG-GG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 11003 | 0.67 | 0.247179 |
Target: 5'- gGCCggugGCCgACCGCGUgaccGUGCagucuGCCGCCa -3' miRNA: 3'- gUGG----CGG-UGGCGCA----UACGg----UGGCGGg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 16763 | 0.68 | 0.240869 |
Target: 5'- gCGCCucaGCCAUCGUGUcgGCCAgCaCCUg -3' miRNA: 3'- -GUGG---CGGUGGCGCAuaCGGUgGcGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 5954 | 0.68 | 0.234693 |
Target: 5'- aCGCUG-UACCgGCGU---CCACCGCCCg -3' miRNA: 3'- -GUGGCgGUGG-CGCAuacGGUGGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 19176 | 0.68 | 0.234693 |
Target: 5'- gCACUGCUACC-CGUAcccGCCAUUGaCCCc -3' miRNA: 3'- -GUGGCGGUGGcGCAUa--CGGUGGC-GGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 11958 | 0.68 | 0.222742 |
Target: 5'- cCGCCcucCCGgCGCGguUGCCGCUGCCa -3' miRNA: 3'- -GUGGc--GGUgGCGCauACGGUGGCGGg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 18664 | 0.68 | 0.222742 |
Target: 5'- aCACCgGCCAUCGUucccGCCGCCGCa- -3' miRNA: 3'- -GUGG-CGGUGGCGcauaCGGUGGCGgg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 1555 | 0.68 | 0.211312 |
Target: 5'- -cCCGCCGCgCGCGaUAUccGCUACaCGCCg -3' miRNA: 3'- guGGCGGUG-GCGC-AUA--CGGUG-GCGGg -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 11061 | 0.69 | 0.180016 |
Target: 5'- gCACgGUCACgCG-GUcgGCCACCGgCCu -3' miRNA: 3'- -GUGgCGGUG-GCgCAuaCGGUGGCgGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 8840 | 0.7 | 0.1529 |
Target: 5'- -cCCGCCGCCGgaGccgGUCAcCCGCCCg -3' miRNA: 3'- guGGCGGUGGCg-CauaCGGU-GGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 1822 | 0.71 | 0.140777 |
Target: 5'- uGCCGCCAauCCGU-UcgGCUcCCGCCCg -3' miRNA: 3'- gUGGCGGU--GGCGcAuaCGGuGGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 10013 | 0.72 | 0.113914 |
Target: 5'- uCACCGCCgguaugcgcgauguuGCCGCGcAUcGUC-CCGCCCu -3' miRNA: 3'- -GUGGCGG---------------UGGCGCaUA-CGGuGGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 7809 | 0.73 | 0.103514 |
Target: 5'- aGCCGCCGCC-CGUcugcGCCACgGCaCCg -3' miRNA: 3'- gUGGCGGUGGcGCAua--CGGUGgCG-GG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 4028 | 0.73 | 0.103514 |
Target: 5'- uCACCGCCACCGCcgGUGgcuuUGCUGCgGCgCu -3' miRNA: 3'- -GUGGCGGUGGCG--CAU----ACGGUGgCGgG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 67 | 0.75 | 0.063679 |
Target: 5'- cCACCGCCAgCGCGcaGUGCUuuccCCGCCUc -3' miRNA: 3'- -GUGGCGGUgGCGCa-UACGGu---GGCGGG- -5' |
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22438 | 3' | -60.8 | NC_005056.1 | + | 16421 | 1.11 | 0.000101 |
Target: 5'- cCACCGCCACCGCGUAUGCCACCGCCCg -3' miRNA: 3'- -GUGGCGGUGGCGCAUACGGUGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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