miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22438 3' -60.8 NC_005056.1 + 19802 0.66 0.325807
Target:  5'- gCACUGCCaACCGuCGUGaagauUGCCcccauugcgccuGCUGCCg -3'
miRNA:   3'- -GUGGCGG-UGGC-GCAU-----ACGG------------UGGCGGg -5'
22438 3' -60.8 NC_005056.1 + 20078 0.66 0.317947
Target:  5'- gCACUGgCugaCGCGUugAUGCUGCCGCUUa -3'
miRNA:   3'- -GUGGCgGug-GCGCA--UACGGUGGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 23247 0.66 0.302659
Target:  5'- uGCCGCCACUgGCGgagGCCAa--CCCu -3'
miRNA:   3'- gUGGCGGUGG-CGCauaCGGUggcGGG- -5'
22438 3' -60.8 NC_005056.1 + 18535 0.66 0.302659
Target:  5'- aCACgCGCCAgCGCGUca--CGCUGCCg -3'
miRNA:   3'- -GUG-GCGGUgGCGCAuacgGUGGCGGg -5'
22438 3' -60.8 NC_005056.1 + 6888 0.66 0.295229
Target:  5'- uCACUGCCugCG-GUGUGCgGCaucgGCuCCa -3'
miRNA:   3'- -GUGGCGGugGCgCAUACGgUGg---CG-GG- -5'
22438 3' -60.8 NC_005056.1 + 11003 0.67 0.247179
Target:  5'- gGCCggugGCCgACCGCGUgaccGUGCagucuGCCGCCa -3'
miRNA:   3'- gUGG----CGG-UGGCGCA----UACGg----UGGCGGg -5'
22438 3' -60.8 NC_005056.1 + 16763 0.68 0.240869
Target:  5'- gCGCCucaGCCAUCGUGUcgGCCAgCaCCUg -3'
miRNA:   3'- -GUGG---CGGUGGCGCAuaCGGUgGcGGG- -5'
22438 3' -60.8 NC_005056.1 + 19176 0.68 0.234693
Target:  5'- gCACUGCUACC-CGUAcccGCCAUUGaCCCc -3'
miRNA:   3'- -GUGGCGGUGGcGCAUa--CGGUGGC-GGG- -5'
22438 3' -60.8 NC_005056.1 + 5954 0.68 0.234693
Target:  5'- aCGCUG-UACCgGCGU---CCACCGCCCg -3'
miRNA:   3'- -GUGGCgGUGG-CGCAuacGGUGGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 18664 0.68 0.222742
Target:  5'- aCACCgGCCAUCGUucccGCCGCCGCa- -3'
miRNA:   3'- -GUGG-CGGUGGCGcauaCGGUGGCGgg -5'
22438 3' -60.8 NC_005056.1 + 11958 0.68 0.222742
Target:  5'- cCGCCcucCCGgCGCGguUGCCGCUGCCa -3'
miRNA:   3'- -GUGGc--GGUgGCGCauACGGUGGCGGg -5'
22438 3' -60.8 NC_005056.1 + 1555 0.68 0.211312
Target:  5'- -cCCGCCGCgCGCGaUAUccGCUACaCGCCg -3'
miRNA:   3'- guGGCGGUG-GCGC-AUA--CGGUG-GCGGg -5'
22438 3' -60.8 NC_005056.1 + 11061 0.69 0.180016
Target:  5'- gCACgGUCACgCG-GUcgGCCACCGgCCu -3'
miRNA:   3'- -GUGgCGGUG-GCgCAuaCGGUGGCgGG- -5'
22438 3' -60.8 NC_005056.1 + 8840 0.7 0.1529
Target:  5'- -cCCGCCGCCGgaGccgGUCAcCCGCCCg -3'
miRNA:   3'- guGGCGGUGGCg-CauaCGGU-GGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 1822 0.71 0.140777
Target:  5'- uGCCGCCAauCCGU-UcgGCUcCCGCCCg -3'
miRNA:   3'- gUGGCGGU--GGCGcAuaCGGuGGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 10013 0.72 0.113914
Target:  5'- uCACCGCCgguaugcgcgauguuGCCGCGcAUcGUC-CCGCCCu -3'
miRNA:   3'- -GUGGCGG---------------UGGCGCaUA-CGGuGGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 4028 0.73 0.103514
Target:  5'- uCACCGCCACCGCcgGUGgcuuUGCUGCgGCgCu -3'
miRNA:   3'- -GUGGCGGUGGCG--CAU----ACGGUGgCGgG- -5'
22438 3' -60.8 NC_005056.1 + 7809 0.73 0.103514
Target:  5'- aGCCGCCGCC-CGUcugcGCCACgGCaCCg -3'
miRNA:   3'- gUGGCGGUGGcGCAua--CGGUGgCG-GG- -5'
22438 3' -60.8 NC_005056.1 + 67 0.75 0.063679
Target:  5'- cCACCGCCAgCGCGcaGUGCUuuccCCGCCUc -3'
miRNA:   3'- -GUGGCGGUgGCGCa-UACGGu---GGCGGG- -5'
22438 3' -60.8 NC_005056.1 + 16421 1.11 0.000101
Target:  5'- cCACCGCCACCGCGUAUGCCACCGCCCg -3'
miRNA:   3'- -GUGGCGGUGGCGCAUACGGUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.