Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22440 | 3' | -56.8 | NC_005056.1 | + | 701 | 0.67 | 0.42109 |
Target: 5'- cCUGGCUGaauGAGuCGGCcacgcuguuCCGCCGCAAg- -3' miRNA: 3'- -GGCCGAC---CUC-GUUGu--------GGCGGCGUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 2819 | 0.7 | 0.248013 |
Target: 5'- aCGGCUgaugGGGGCAACgcugucccaGCCGUCGCGc-- -3' miRNA: 3'- gGCCGA----CCUCGUUG---------UGGCGGCGUuau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 5481 | 0.67 | 0.401747 |
Target: 5'- aCGGuCUGaccaugccGGGUaAACACCGCCGCAc-- -3' miRNA: 3'- gGCC-GAC--------CUCG-UUGUGGCGGCGUuau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 5607 | 0.69 | 0.313934 |
Target: 5'- aCCGGCagcgUGG-GCGcGCAUgGCCGCAAg- -3' miRNA: 3'- -GGCCG----ACCuCGU-UGUGgCGGCGUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 6608 | 0.66 | 0.475984 |
Target: 5'- aCUGGCUGaacuGGGUgcggugcugccacacGGCACCGCCGuCGAa- -3' miRNA: 3'- -GGCCGAC----CUCG---------------UUGUGGCGGC-GUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 6966 | 0.69 | 0.283111 |
Target: 5'- aCCGGCgauacccagcaUGGAGCcgaugccgcACACCGCagGCAGUGa -3' miRNA: 3'- -GGCCG-----------ACCUCGu--------UGUGGCGg-CGUUAU- -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 10698 | 0.66 | 0.4614 |
Target: 5'- aCCGGCggcacaGGccAGCAuCACCGCCcguGCAGc- -3' miRNA: 3'- -GGCCGa-----CC--UCGUuGUGGCGG---CGUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 11150 | 0.7 | 0.241441 |
Target: 5'- aCCGGCUGGGGCGcgACAuCCGuCUGUc--- -3' miRNA: 3'- -GGCCGACCUCGU--UGU-GGC-GGCGuuau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 17503 | 1.09 | 0.000331 |
Target: 5'- aCCGGCUGGAGCAACACCGCCGCAAUAu -3' miRNA: 3'- -GGCCGACCUCGUUGUGGCGGCGUUAU- -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 18662 | 0.66 | 0.482305 |
Target: 5'- aCCGGCcaucGUuccCGCCGCCGCAAUc -3' miRNA: 3'- -GGCCGaccuCGuu-GUGGCGGCGUUAu -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 27120 | 0.76 | 0.097383 |
Target: 5'- gCCGGUauuGAGCGuuACGCCGCCGCAGa- -3' miRNA: 3'- -GGCCGac-CUCGU--UGUGGCGGCGUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 27778 | 0.67 | 0.411348 |
Target: 5'- -aGGCU---GCAcGCGCCGCCGCAGa- -3' miRNA: 3'- ggCCGAccuCGU-UGUGGCGGCGUUau -5' |
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22440 | 3' | -56.8 | NC_005056.1 | + | 28105 | 0.67 | 0.381134 |
Target: 5'- aCCGGCUcccacgccuucuGAGC-ACGCCGCaGCAGUGc -3' miRNA: 3'- -GGCCGAc-----------CUCGuUGUGGCGgCGUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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