miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22440 5' -58.4 NC_005056.1 + 17542 1.07 0.000305
Target:  5'- uUUCAUCCGGUCAGCCUGGCUGACCGGu -3'
miRNA:   3'- -AAGUAGGCCAGUCGGACCGACUGGCC- -5'
22440 5' -58.4 NC_005056.1 + 17605 0.88 0.008804
Target:  5'- gUUAaCCGGUCAGCCaGGCUGACCGGa -3'
miRNA:   3'- aAGUaGGCCAGUCGGaCCGACUGGCC- -5'
22440 5' -58.4 NC_005056.1 + 20277 0.7 0.203046
Target:  5'- aUCAgCCGGUCacGGCaCcGGCUGGCCGc -3'
miRNA:   3'- aAGUaGGCCAG--UCG-GaCCGACUGGCc -5'
22440 5' -58.4 NC_005056.1 + 28346 0.66 0.395329
Target:  5'- aUUCGUUCcgaccgGGUCAGUCUGGCcGACgGu -3'
miRNA:   3'- -AAGUAGG------CCAGUCGGACCGaCUGgCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.