miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22444 5' -50.3 NC_005056.1 + 13641 0.66 0.817333
Target:  5'- cCGaGUUAucuguauuUCGCUGGCuAUagaAAUGCCAUCc -3'
miRNA:   3'- -GC-CAAU--------AGUGGCCG-UAg--UUACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 9729 0.66 0.836975
Target:  5'- gGGUUAUCACCGGaauaaAUCcccggcagaacgAAcGCCGUg -3'
miRNA:   3'- gCCAAUAGUGGCCg----UAG------------UUaCGGUAg -5'
22444 5' -50.3 NC_005056.1 + 20723 0.66 0.817333
Target:  5'- uGGauggCACCGGCAUgAuuuacggcauguAUGUCAUCa -3'
miRNA:   3'- gCCaauaGUGGCCGUAgU------------UACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 7623 0.66 0.79678
Target:  5'- aCGGUUAUCugugugguuGCCGGUgguGUCGgcguguAUGCCAc- -3'
miRNA:   3'- -GCCAAUAG---------UGGCCG---UAGU------UACGGUag -5'
22444 5' -50.3 NC_005056.1 + 19113 0.67 0.775421
Target:  5'- aGGggGUCAauGGCGgguacggguagCAGUGCCGUUg -3'
miRNA:   3'- gCCaaUAGUggCCGUa----------GUUACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 16840 0.67 0.786194
Target:  5'- aCGGaau---UUGGCAUUGAUGCCGUCa -3'
miRNA:   3'- -GCCaauaguGGCCGUAGUUACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 1614 0.67 0.786194
Target:  5'- uCGGUauugaUGcCACCGGCcUCGGUGUCGg- -3'
miRNA:   3'- -GCCA-----AUaGUGGCCGuAGUUACGGUag -5'
22444 5' -50.3 NC_005056.1 + 4286 0.67 0.786194
Target:  5'- uGG-UGUCACCGGC-UCcAUcGCCAg- -3'
miRNA:   3'- gCCaAUAGUGGCCGuAGuUA-CGGUag -5'
22444 5' -50.3 NC_005056.1 + 4324 0.67 0.742117
Target:  5'- cCGGUgg-CACCGaGCGUCA--GCCGa- -3'
miRNA:   3'- -GCCAauaGUGGC-CGUAGUuaCGGUag -5'
22444 5' -50.3 NC_005056.1 + 16779 0.68 0.719238
Target:  5'- ----cAUCGuugaCGGCAUCAAUGCCAa- -3'
miRNA:   3'- gccaaUAGUg---GCCGUAGUUACGGUag -5'
22444 5' -50.3 NC_005056.1 + 10706 0.68 0.695955
Target:  5'- aGGUcAUUACCGGCggCAcagGCCAg- -3'
miRNA:   3'- gCCAaUAGUGGCCGuaGUua-CGGUag -5'
22444 5' -50.3 NC_005056.1 + 5480 0.68 0.684198
Target:  5'- cCGGcaaUAUCGCCGGUAUCcaGAcGCCAc- -3'
miRNA:   3'- -GCCa--AUAGUGGCCGUAG--UUaCGGUag -5'
22444 5' -50.3 NC_005056.1 + 16250 0.69 0.660523
Target:  5'- aGGUggcuguugCACUGGCAUCAGU-CUGUCa -3'
miRNA:   3'- gCCAaua-----GUGGCCGUAGUUAcGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 19609 0.69 0.648632
Target:  5'- ----aAUCACUGGCGUCAA--CCAUCg -3'
miRNA:   3'- gccaaUAGUGGCCGUAGUUacGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 21024 0.7 0.601019
Target:  5'- gGGaUAUUACCGGCAauaUCAGcGaCCGUCu -3'
miRNA:   3'- gCCaAUAGUGGCCGU---AGUUaC-GGUAG- -5'
22444 5' -50.3 NC_005056.1 + 10184 0.7 0.589163
Target:  5'- aCGGUUcGUUGCUGGCGUCAAUGauugaCCAg- -3'
miRNA:   3'- -GCCAA-UAGUGGCCGUAGUUAC-----GGUag -5'
22444 5' -50.3 NC_005056.1 + 6922 0.71 0.54227
Target:  5'- uGGgUAUCGCCGGuUAUCAGgugauugagauUGCCAUUc -3'
miRNA:   3'- gCCaAUAGUGGCC-GUAGUU-----------ACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 19639 0.74 0.380735
Target:  5'- uCGGUggcgCACUGGCGcugacuggcgucaUCGGUGCCAUUg -3'
miRNA:   3'- -GCCAaua-GUGGCCGU-------------AGUUACGGUAG- -5'
22444 5' -50.3 NC_005056.1 + 16520 0.74 0.353552
Target:  5'- aCGG-UGUUACCGGCAUCA--GCgCGUCc -3'
miRNA:   3'- -GCCaAUAGUGGCCGUAGUuaCG-GUAG- -5'
22444 5' -50.3 NC_005056.1 + 4206 0.88 0.050317
Target:  5'- aCGGUgaauuuuuucgacacAUCACCGGCGUCGAUGCCGUUc -3'
miRNA:   3'- -GCCAa--------------UAGUGGCCGUAGUUACGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.