miRNA: 3'- gUCGCUcACCC----UGAUAGg-----UCCUAUCG- -5'
miRNA: 3'- gUCG-CUCa--------CCCUGAUAGGuCCUAUCG- -5'
miRNA: 3'- -GUCGCUCACCCUGAUAGGUCCUAUCG- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22449 | 3' | -53 | NC_005062.1 | + | 3002 | 0.66 | 0.330456 |
|
Target: 5'- gAGUGA-UGGGggcuGCUGUCaagaauGGGAUAGCg -3' miRNA: 3'- gUCGCUcACCC----UGAUAGg-----UCCUAUCG- -5' |
|||||||
| 22449 | 3' | -53 | NC_005062.1 | + | 4083 | 0.75 | 0.084231 |
|
Target: 5'- gGGCaGAGggaacaaaaGGGGCUAUCCuGGAUAGUc -3' miRNA: 3'- gUCG-CUCa--------CCCUGAUAGGuCCUAUCG- -5' |
|||||||
| 22449 | 3' | -53 | NC_005062.1 | + | 4139 | 1.11 | 0.000113 |
|
Target: 5'- cCAGCGAGUGGGACUAUCCAGGAUAGCc -3' miRNA: 3'- -GUCGCUCACCCUGAUAGGUCCUAUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home