miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2245 3' -55.9 NC_001405.1 + 10517 0.66 0.574106
Target:  5'- cGCGacuUUcCGCGCGCcuccAC-CACCGCCGc -3'
miRNA:   3'- -UGCau-AA-GCGCGCGu---UGcGUGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 25377 0.66 0.551815
Target:  5'- aACGcagUCGCGgacguaguCGCGGCGCGCCucGCCc -3'
miRNA:   3'- -UGCauaAGCGC--------GCGUUGCGUGG--CGGu -5'
2245 3' -55.9 NC_001405.1 + 26920 0.66 0.551815
Target:  5'- uACGgGUUCGUuggGCGCcaGACGCAgCGCUc -3'
miRNA:   3'- -UGCaUAAGCG---CGCG--UUGCGUgGCGGu -5'
2245 3' -55.9 NC_001405.1 + 16042 0.66 0.529794
Target:  5'- cGCGgugGUggaggagGCGCGCAacuacACGCccacGCCGCCAc -3'
miRNA:   3'- -UGCa--UAag-----CGCGCGU-----UGCG----UGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 16158 0.66 0.529794
Target:  5'- gGCGgaggCGCGUaGCAcguCGcCACCGCCGc -3'
miRNA:   3'- -UGCauaaGCGCG-CGUu--GC-GUGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 18603 0.66 0.518904
Target:  5'- ------cCGCGCGUcccuGCGCcguGCCGCCAg -3'
miRNA:   3'- ugcauaaGCGCGCGu---UGCG---UGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 12319 0.67 0.497399
Target:  5'- gGCGg---UGCGgGCGGCGCugCagaGCCAg -3'
miRNA:   3'- -UGCauaaGCGCgCGUUGCGugG---CGGU- -5'
2245 3' -55.9 NC_001405.1 + 6451 0.67 0.480487
Target:  5'- cGCGguuggCGCGUGCAccuggugcccgacgaGCGCACCaCCGu -3'
miRNA:   3'- -UGCauaa-GCGCGCGU---------------UGCGUGGcGGU- -5'
2245 3' -55.9 NC_001405.1 + 11282 0.67 0.465922
Target:  5'- aGCGUGacaCGCGCGaGGCGUACgUGCCGc -3'
miRNA:   3'- -UGCAUaa-GCGCGCgUUGCGUG-GCGGU- -5'
2245 3' -55.9 NC_001405.1 + 12675 0.68 0.445522
Target:  5'- aGCGUGagCGCGCGCAGCaGCAggGCa- -3'
miRNA:   3'- -UGCAUaaGCGCGCGUUG-CGUggCGgu -5'
2245 3' -55.9 NC_001405.1 + 12077 0.68 0.445522
Target:  5'- cGCGg--UCGCugaGCu-CGCGCCGCCGg -3'
miRNA:   3'- -UGCauaAGCGcg-CGuuGCGUGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 17845 0.68 0.422693
Target:  5'- ------cCGcCGCGCAugcgacggugcgacGCGCGCCGCCGc -3'
miRNA:   3'- ugcauaaGC-GCGCGU--------------UGCGUGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 11516 0.68 0.406277
Target:  5'- cACGUGUgCGCGCGCGGgacuaauccCGguCCGCg- -3'
miRNA:   3'- -UGCAUAaGCGCGCGUU---------GCguGGCGgu -5'
2245 3' -55.9 NC_001405.1 + 33262 0.69 0.387486
Target:  5'- --uUAUUCGCGCGCugcuGCaGCACCaCCGc -3'
miRNA:   3'- ugcAUAAGCGCGCGu---UG-CGUGGcGGU- -5'
2245 3' -55.9 NC_001405.1 + 12539 0.69 0.360394
Target:  5'- uGCGUgggGUUUGCGCGCGcCGggacCACCGCUu -3'
miRNA:   3'- -UGCA---UAAGCGCGCGUuGC----GUGGCGGu -5'
2245 3' -55.9 NC_001405.1 + 21634 0.7 0.34308
Target:  5'- gACGUGgucCGUGUGCAccagcCGCACCGCg- -3'
miRNA:   3'- -UGCAUaa-GCGCGCGUu----GCGUGGCGgu -5'
2245 3' -55.9 NC_001405.1 + 11461 0.7 0.34308
Target:  5'- -aGUcccgCGCGCGCAcACGUggcgGCCGCCGa -3'
miRNA:   3'- ugCAuaa-GCGCGCGU-UGCG----UGGCGGU- -5'
2245 3' -55.9 NC_001405.1 + 16409 0.7 0.31825
Target:  5'- aGCGgccugCGCGUGCccguGCGCACCcGCCc -3'
miRNA:   3'- -UGCauaa-GCGCGCGu---UGCGUGG-CGGu -5'
2245 3' -55.9 NC_001405.1 + 5467 0.71 0.297843
Target:  5'- gGCGUGgcccUUgGCGCGCAGCuugcccuuggaggagGCGCCGCaCGa -3'
miRNA:   3'- -UGCAU----AAgCGCGCGUUG---------------CGUGGCG-GU- -5'
2245 3' -55.9 NC_001405.1 + 12731 0.72 0.245351
Target:  5'- uGCugcugCGCGCGCucACGCugCGCCAc -3'
miRNA:   3'- -UGcauaaGCGCGCGu-UGCGugGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.