miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22469 5' -43.6 NC_005066.1 + 42593 0.66 1
Target:  5'- ----gGCUUGGAcuAUCGAucGCGGggaAACCg -3'
miRNA:   3'- aguuaCGAACUU--UAGCU--CGUCa--UUGG- -5'
22469 5' -43.6 NC_005066.1 + 102078 0.66 1
Target:  5'- aCGAUGUUUaGcAGGUUuuuAGCAGUGGCCu -3'
miRNA:   3'- aGUUACGAA-C-UUUAGc--UCGUCAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 75851 0.67 1
Target:  5'- aUCAccUGCUUGAGuucgaauAUUGAGCGGUGu-- -3'
miRNA:   3'- -AGUu-ACGAACUU-------UAGCUCGUCAUugg -5'
22469 5' -43.6 NC_005066.1 + 18082 0.67 1
Target:  5'- uUCug-GUUuagGAAAUUcugGGGCAGUGACCu -3'
miRNA:   3'- -AGuuaCGAa--CUUUAG---CUCGUCAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 147876 0.66 1
Target:  5'- aUCAAUGauggUGGAgucGUCGAGCAuUAcGCCu -3'
miRNA:   3'- -AGUUACga--ACUU---UAGCUCGUcAU-UGG- -5'
22469 5' -43.6 NC_005066.1 + 78368 0.67 0.999999
Target:  5'- -uGcgGCUuguggUGGAGUUGAGUugguuGUAACCa -3'
miRNA:   3'- agUuaCGA-----ACUUUAGCUCGu----CAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 53799 0.67 0.999999
Target:  5'- gCAGUGCcagcGAAUCGAcgucuucgGCGGUGAUCa -3'
miRNA:   3'- aGUUACGaac-UUUAGCU--------CGUCAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 67328 0.68 0.999996
Target:  5'- -gGGUGCUggUGAAAcuaauacgccUCcGGUAGUAACCg -3'
miRNA:   3'- agUUACGA--ACUUU----------AGcUCGUCAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 126129 0.68 0.999995
Target:  5'- uUCAAUGaCUucUGAAAUUGAuaucuauGCGgGUGACCu -3'
miRNA:   3'- -AGUUAC-GA--ACUUUAGCU-------CGU-CAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 108473 0.68 0.999995
Target:  5'- aUUAAUGaaguuaugGAGAauUUGAGCGGUGACUa -3'
miRNA:   3'- -AGUUACgaa-----CUUU--AGCUCGUCAUUGG- -5'
22469 5' -43.6 NC_005066.1 + 109956 0.68 0.999993
Target:  5'- -----aCUUGAGAUCuGAGCGG-GACCa -3'
miRNA:   3'- aguuacGAACUUUAG-CUCGUCaUUGG- -5'
22469 5' -43.6 NC_005066.1 + 17074 0.7 0.999929
Target:  5'- aUCGAUGCUUucuGAAUUGAGCAaagauGCCu -3'
miRNA:   3'- -AGUUACGAAc--UUUAGCUCGUcau--UGG- -5'
22469 5' -43.6 NC_005066.1 + 72607 0.71 0.999788
Target:  5'- cCAcUGUUUGAccAGUCG-GCGGUAACa -3'
miRNA:   3'- aGUuACGAACU--UUAGCuCGUCAUUGg -5'
22469 5' -43.6 NC_005066.1 + 73180 0.72 0.999134
Target:  5'- -gAGUGUUUGAAGUUGGGCGGaaagugGACa -3'
miRNA:   3'- agUUACGAACUUUAGCUCGUCa-----UUGg -5'
22469 5' -43.6 NC_005066.1 + 68993 0.72 0.998931
Target:  5'- aUCAAUGaCUUGucaGAAUCaGAGCAGUggUUg -3'
miRNA:   3'- -AGUUAC-GAAC---UUUAG-CUCGUCAuuGG- -5'
22469 5' -43.6 NC_005066.1 + 73333 1.17 0.019415
Target:  5'- gUCAAUGCUUGAAAUCGAGCAGUAACCg -3'
miRNA:   3'- -AGUUACGAACUUUAGCUCGUCAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.