Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 12368 | 0.66 | 0.409006 |
|
Target: 5'- -gCCGcCCGcaCCGCCG-GGUCCGuUGCg -3' miRNA: 3'- uaGGCcGGCa-GGCGGCaCUAGGU-ACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 34861 | 0.66 | 0.381561 |
|
Target: 5'- uUCCuGGCgGggaagUgGCCGcgcUGGUCCGUGCa -3' miRNA: 3'- uAGG-CCGgCa----GgCGGC---ACUAGGUACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 4662 | 0.66 | 0.37269 |
|
Target: 5'- -cCCaGGCCG-CCGCCcGUGggCCcauUGCc -3' miRNA: 3'- uaGG-CCGGCaGGCGG-CACuaGGu--ACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 10972 | 0.69 | 0.263629 |
|
Target: 5'- aGUCCGGCCGgcCCGagacucgaaCCGggGGUCC-UGCg -3' miRNA: 3'- -UAGGCCGGCa-GGC---------GGCa-CUAGGuACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 12450 | 0.69 | 0.254275 |
|
Target: 5'- -aCCGGCUcUCCGCaauucuggaagcgGUGGUCCcgGCg -3' miRNA: 3'- uaGGCCGGcAGGCGg------------CACUAGGuaCG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 17789 | 0.69 | 0.231474 |
|
Target: 5'- -gCCGcCCGUCagGCCGUGGccggCCAUGCc -3' miRNA: 3'- uaGGCcGGCAGg-CGGCACUa---GGUACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 5106 | 0.72 | 0.150145 |
|
Target: 5'- ---aGGCCGUCCGCCGU-AggCAUGCu -3' miRNA: 3'- uaggCCGGCAGGCGGCAcUagGUACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 10693 | 0.75 | 0.087762 |
|
Target: 5'- -cCCGGUCGUCCGCCaUGAUaCCcuUGCg -3' miRNA: 3'- uaGGCCGGCAGGCGGcACUA-GGu-ACG- -5' |
|||||||
| 2247 | 5' | -59.2 | NC_001405.1 | + | 10671 | 1.1 | 0.000198 |
|
Target: 5'- gAUCCGGCCGUCCGCCGUGAUCCAUGCg -3' miRNA: 3'- -UAGGCCGGCAGGCGGCACUAGGUACG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home