miRNA: 3'- uAGGACCUAGCA--------UACuuUAU-----UUGCGG- -5'
miRNA: 3'- -UAGGaCCUaGCAUACUUUAuuuGCGG- -5'
miRNA: 3'- -UAGGAC-CUAGCAUACuUUAUUUGC-GG- -5'
miRNA: 3'- uaGGACCUAGCAUACUuUAUuu---------GCGG- -5'
miRNA: 3'- uaGGACCUAGCAUACUUUAUUUGCGG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22471 | 5' | -44.9 | NC_005066.1 | + | 99671 | 0.66 | 0.999999 |
|
Target: 5'- uUCUUGGAUCGUaauauccuGUGuuGUGucuauAACGUCu -3' miRNA: 3'- uAGGACCUAGCA--------UACuuUAU-----UUGCGG- -5' |
|||||||
| 22471 | 5' | -44.9 | NC_005066.1 | + | 4888 | 0.67 | 0.999991 |
|
Target: 5'- aGUCCaGGAaCGUAUGAAAUuuuUGUCc -3' miRNA: 3'- -UAGGaCCUaGCAUACUUUAuuuGCGG- -5' |
|||||||
| 22471 | 5' | -44.9 | NC_005066.1 | + | 57192 | 0.67 | 0.999988 |
|
Target: 5'- uAUCUUGuGAUUGUAUG-GAUGGGCGaCUa -3' miRNA: 3'- -UAGGAC-CUAGCAUACuUUAUUUGC-GG- -5' |
|||||||
| 22471 | 5' | -44.9 | NC_005066.1 | + | 134577 | 0.74 | 0.989495 |
|
Target: 5'- -gCUUGGAUCGUAUGAuGUAuuggaacuaauCGCCu -3' miRNA: 3'- uaGGACCUAGCAUACUuUAUuu---------GCGG- -5' |
|||||||
| 22471 | 5' | -44.9 | NC_005066.1 | + | 78192 | 1.03 | 0.083076 |
|
Target: 5'- -aUCUGGAUCGUAUGAAAUAAACGCCg -3' miRNA: 3'- uaGGACCUAGCAUACUUUAUUUGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home