miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22472 3' -52.1 NC_005066.1 + 51168 0.69 0.927813
Target:  5'- cUUGCCAUgcgAUACCCGCcaggaugugaccUAAACCCu -3'
miRNA:   3'- uGGCGGUAaa-UGUGGGCG------------AUUUGGGu -5'
22472 3' -52.1 NC_005066.1 + 59947 0.67 0.969812
Target:  5'- cACC-UUAUUUGCuaaUCGCUAAACCCAa -3'
miRNA:   3'- -UGGcGGUAAAUGug-GGCGAUUUGGGU- -5'
22472 3' -52.1 NC_005066.1 + 127956 0.66 0.987745
Target:  5'- gACCGCCcu---UAUCCGCUAAuguUCCAu -3'
miRNA:   3'- -UGGCGGuaaauGUGGGCGAUUu--GGGU- -5'
22472 3' -52.1 NC_005066.1 + 82342 1.09 0.006771
Target:  5'- aACCGCCAUUUACACCCGCUAAACCCAa -3'
miRNA:   3'- -UGGCGGUAAAUGUGGGCGAUUUGGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.