miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22473 5' -53 NC_005066.1 + 102138 0.66 0.976842
Target:  5'- uUCCCGuCAcGAGgGgAACCAGUcauACCGa -3'
miRNA:   3'- -AGGGC-GUaCUCgUaUUGGUCGu--UGGC- -5'
22473 5' -53 NC_005066.1 + 158896 0.66 0.976842
Target:  5'- uUCuuGCGUGAuaaCGUGACCAGauuCCGc -3'
miRNA:   3'- -AGggCGUACUc--GUAUUGGUCguuGGC- -5'
22473 5' -53 NC_005066.1 + 63279 0.66 0.974264
Target:  5'- ---aGCAUGAGCAUAACCAuGUAAg-- -3'
miRNA:   3'- agggCGUACUCGUAUUGGU-CGUUggc -5'
22473 5' -53 NC_005066.1 + 19004 0.66 0.971483
Target:  5'- aCCCGC-UGcGGCAUuGCCAaCAAUCGa -3'
miRNA:   3'- aGGGCGuAC-UCGUAuUGGUcGUUGGC- -5'
22473 5' -53 NC_005066.1 + 25027 0.66 0.968492
Target:  5'- aUCCaCGCGcaauaacauucUGGGUAauAUCAGCAACCu -3'
miRNA:   3'- -AGG-GCGU-----------ACUCGUauUGGUCGUUGGc -5'
22473 5' -53 NC_005066.1 + 148236 0.67 0.961856
Target:  5'- gUUaaGCAUGaAGC-UAGCgCGGCAACCGc -3'
miRNA:   3'- -AGggCGUAC-UCGuAUUG-GUCGUUGGC- -5'
22473 5' -53 NC_005066.1 + 104129 0.67 0.950177
Target:  5'- cCCCGCAUucGCAcuUGAUCGGUAcuGCCa -3'
miRNA:   3'- aGGGCGUAcuCGU--AUUGGUCGU--UGGc -5'
22473 5' -53 NC_005066.1 + 135777 0.7 0.845991
Target:  5'- cCCCGCcacgaauaccgccuuGUGAGCAUGACUuaacGGCAGuCUGa -3'
miRNA:   3'- aGGGCG---------------UACUCGUAUUGG----UCGUU-GGC- -5'
22473 5' -53 NC_005066.1 + 45355 0.76 0.565793
Target:  5'- aUCCCaGCGUgGAGCAUuACCAGUAACgGc -3'
miRNA:   3'- -AGGG-CGUA-CUCGUAuUGGUCGUUGgC- -5'
22473 5' -53 NC_005066.1 + 82606 1.09 0.005739
Target:  5'- cUCCCGCAUGAGCAUAACCAGCAACCGc -3'
miRNA:   3'- -AGGGCGUACUCGUAUUGGUCGUUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.