miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22476 3' -40.9 NC_005066.1 + 148447 0.66 1
Target:  5'- ----cGAUgUUACCGAuugcugGAGCGGUuGCc -3'
miRNA:   3'- aguaaCUAaAAUGGCU------UUCGCUAuCG- -5'
22476 3' -40.9 NC_005066.1 + 91292 0.74 0.999925
Target:  5'- aUCGUUGAaggUaucuccgaggaugaGCCGGAacuGGCGGUAGCa -3'
miRNA:   3'- -AGUAACUaaaA--------------UGGCUU---UCGCUAUCG- -5'
22476 3' -40.9 NC_005066.1 + 2218 0.76 0.999557
Target:  5'- -gGUUGAUUUUucACUGAAAGCaaGUAGCa -3'
miRNA:   3'- agUAACUAAAA--UGGCUUUCGc-UAUCG- -5'
22476 3' -40.9 NC_005066.1 + 148048 1.18 0.036381
Target:  5'- aUCAUUGAUUUUACCGAAAGCGAUAGCa -3'
miRNA:   3'- -AGUAACUAAAAUGGCUUUCGCUAUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.