miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22479 5' -41.7 NC_005066.1 + 48467 0.66 1
Target:  5'- --aGGUUgaccGCUUUAUCGGUGAaugUCUGa -3'
miRNA:   3'- guaCUAAaa--UGAAGUAGCUACU---AGGC- -5'
22479 5' -41.7 NC_005066.1 + 146007 0.66 1
Target:  5'- --aGGUUgcaaGCgagugUCAUCGAUGAUCgGu -3'
miRNA:   3'- guaCUAAaa--UGa----AGUAGCUACUAGgC- -5'
22479 5' -41.7 NC_005066.1 + 59971 0.66 1
Target:  5'- uGUGAca-UGCUUCGUUGAUGAUa-- -3'
miRNA:   3'- gUACUaaaAUGAAGUAGCUACUAggc -5'
22479 5' -41.7 NC_005066.1 + 26503 0.67 1
Target:  5'- aUAUGAaaaUUUUGCUUUua-GGUGAUCUGc -3'
miRNA:   3'- -GUACU---AAAAUGAAGuagCUACUAGGC- -5'
22479 5' -41.7 NC_005066.1 + 76040 0.67 1
Target:  5'- --cGGUUcgUUAUUUCAUCGGU--UCCGg -3'
miRNA:   3'- guaCUAA--AAUGAAGUAGCUAcuAGGC- -5'
22479 5' -41.7 NC_005066.1 + 133395 0.71 0.999987
Target:  5'- uCAUGAUagcagggUUAUCGAUGAUCUGg -3'
miRNA:   3'- -GUACUAaaauga-AGUAGCUACUAGGC- -5'
22479 5' -41.7 NC_005066.1 + 32788 1.11 0.074341
Target:  5'- cCAUGAUUUUACUUCAUCGAUGAUCCGc -3'
miRNA:   3'- -GUACUAAAAUGAAGUAGCUACUAGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.