miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22482 3' -41.8 NC_005066.1 + 10297 0.68 1
Target:  5'- cGUUAACGCCaUGAuucaGGACGAGGgcGCUAc -3'
miRNA:   3'- -CAGUUGUGG-AUU----UUUGCUUUuuCGGU- -5'
22482 3' -41.8 NC_005066.1 + 11353 0.69 0.999999
Target:  5'- -aCAACACCgacaauAGCGGAcagcAAGCCAa -3'
miRNA:   3'- caGUUGUGGauuu--UUGCUUu---UUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 22042 0.76 0.997728
Target:  5'- --aAAUGCCgGAAAGCGAGAAAGCUAa -3'
miRNA:   3'- cagUUGUGGaUUUUUGCUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 23126 0.68 1
Target:  5'- --aAACGCgUAGAAuacGCaGAGAAAGCCAa -3'
miRNA:   3'- cagUUGUGgAUUUU---UG-CUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 32848 0.68 1
Target:  5'- aUCGcCACCUAAGAAUGuu--AGCCc -3'
miRNA:   3'- cAGUuGUGGAUUUUUGCuuuuUCGGu -5'
22482 3' -41.8 NC_005066.1 + 33115 0.71 0.999988
Target:  5'- cUCAAU-CCUAAGAACGggGAA-CCAu -3'
miRNA:   3'- cAGUUGuGGAUUUUUGCuuUUUcGGU- -5'
22482 3' -41.8 NC_005066.1 + 34442 0.95 0.399689
Target:  5'- uGUCAACACCccAAAACGAAAAAGCCGa -3'
miRNA:   3'- -CAGUUGUGGauUUUUGCUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 45272 0.69 0.999999
Target:  5'- uGUCAACAaCUAAAAACaaAAAGGGCUAu -3'
miRNA:   3'- -CAGUUGUgGAUUUUUGc-UUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 47680 1.11 0.063886
Target:  5'- uGUCAACACCUAAAAACGAAAAAGCCAc -3'
miRNA:   3'- -CAGUUGUGGAUUUUUGCUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 50114 0.66 1
Target:  5'- -aUAGCACCUucAAAAACaucauuGAGAGCCu -3'
miRNA:   3'- caGUUGUGGA--UUUUUGcu----UUUUCGGu -5'
22482 3' -41.8 NC_005066.1 + 51859 0.7 0.999996
Target:  5'- uUCGACuuCCUGAAAAUGGAAGA-CCGa -3'
miRNA:   3'- cAGUUGu-GGAUUUUUGCUUUUUcGGU- -5'
22482 3' -41.8 NC_005066.1 + 53510 0.75 0.998124
Target:  5'- aUCAuauCAUCauAAAACGAAAAAGCCAa -3'
miRNA:   3'- cAGUu--GUGGauUUUUGCUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 55397 0.66 1
Target:  5'- uGUCAACAgacaUAGGAACaguAAAGGCCAu -3'
miRNA:   3'- -CAGUUGUgg--AUUUUUGcu-UUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 64370 0.66 1
Target:  5'- aGUUAAacCAgCUAAAGAgacaaggccacCGGAAAAGCCAa -3'
miRNA:   3'- -CAGUU--GUgGAUUUUU-----------GCUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 68535 0.68 1
Target:  5'- aUCAGCA-CUAAGGGCGcgGAAGCa- -3'
miRNA:   3'- cAGUUGUgGAUUUUUGCuuUUUCGgu -5'
22482 3' -41.8 NC_005066.1 + 73940 0.86 0.809203
Target:  5'- uGUCAACACC-AAAAAUaGAAAAAGCCAa -3'
miRNA:   3'- -CAGUUGUGGaUUUUUG-CUUUUUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 92170 0.68 1
Target:  5'- cGUCAgacGCACCaGAAAGCGAuAAAaCCGa -3'
miRNA:   3'- -CAGU---UGUGGaUUUUUGCUuUUUcGGU- -5'
22482 3' -41.8 NC_005066.1 + 93216 0.67 1
Target:  5'- gGUCcccGCugCUgGAGAACGAAAAAcuGCCGg -3'
miRNA:   3'- -CAGu--UGugGA-UUUUUGCUUUUU--CGGU- -5'
22482 3' -41.8 NC_005066.1 + 102903 0.66 1
Target:  5'- --gGACGCCguaagcaauUGGAAGCGGAcaacGAGCCAg -3'
miRNA:   3'- cagUUGUGG---------AUUUUUGCUUu---UUCGGU- -5'
22482 3' -41.8 NC_005066.1 + 112720 0.67 1
Target:  5'- aUCAACACC-AGcAACGGcacuAGCCAc -3'
miRNA:   3'- cAGUUGUGGaUUuUUGCUuuu-UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.