miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22489 5' -44.7 NC_005068.1 + 95789 0.67 0.999834
Target:  5'- aUUUCGUaaaauuaaaAUUuuuaaaaucuucaaaUUAACUCGGACUCAUg- -3'
miRNA:   3'- -AAAGCG---------UAA---------------AAUUGAGCCUGAGUAga -5'
22489 5' -44.7 NC_005068.1 + 21613 0.68 0.999601
Target:  5'- --aUGCAacg-AACUCGGACUCAc-- -3'
miRNA:   3'- aaaGCGUaaaaUUGAGCCUGAGUaga -5'
22489 5' -44.7 NC_005068.1 + 72004 0.74 0.969012
Target:  5'- aUUUCGCAaaUUAACUCGG-CUCGUg- -3'
miRNA:   3'- -AAAGCGUaaAAUUGAGCCuGAGUAga -5'
22489 5' -44.7 NC_005068.1 + 56302 0.75 0.948793
Target:  5'- -aUCGCAaaUUAAgUCGGACUCAUa- -3'
miRNA:   3'- aaAGCGUaaAAUUgAGCCUGAGUAga -5'
22489 5' -44.7 NC_005068.1 + 56458 0.76 0.90122
Target:  5'- -aUCGCAaaUUAAgUCGGACUCGUUa -3'
miRNA:   3'- aaAGCGUaaAAUUgAGCCUGAGUAGa -5'
22489 5' -44.7 NC_005068.1 + 56616 0.78 0.85329
Target:  5'- -aUCGCAaaUUAACUCaGACUCGUCa -3'
miRNA:   3'- aaAGCGUaaAAUUGAGcCUGAGUAGa -5'
22489 5' -44.7 NC_005068.1 + 3149 0.8 0.743664
Target:  5'- -aUCugAUUUUAACUCGGACUCGUCg -3'
miRNA:   3'- aaAGcgUAAAAUUGAGCCUGAGUAGa -5'
22489 5' -44.7 NC_005068.1 + 3347 0.81 0.687909
Target:  5'- -cUCugAUUUUAACUCGGACUCAUCUc -3'
miRNA:   3'- aaAGcgUAAAAUUGAGCCUGAGUAGA- -5'
22489 5' -44.7 NC_005068.1 + 47148 0.82 0.66511
Target:  5'- -aUCugAUUUUAACUCGGACUCAUCUc -3'
miRNA:   3'- aaAGcgUAAAAUUGAGCCUGAGUAGA- -5'
22489 5' -44.7 NC_005068.1 + 56219 0.82 0.630687
Target:  5'- -aUCGCAaaUUAAgUCGGACUCAUCUu -3'
miRNA:   3'- aaAGCGUaaAAUUgAGCCUGAGUAGA- -5'
22489 5' -44.7 NC_005068.1 + 46975 0.83 0.607726
Target:  5'- uUUUCGCAaaUUAACUCGGACUCAg-- -3'
miRNA:   3'- -AAAGCGUaaAAUUGAGCCUGAGUaga -5'
22489 5' -44.7 NC_005068.1 + 2993 0.87 0.394125
Target:  5'- uUUUCGCAaaUUAACUCGGACUCAUUUu -3'
miRNA:   3'- -AAAGCGUaaAAUUGAGCCUGAGUAGA- -5'
22489 5' -44.7 NC_005068.1 + 10114 0.92 0.222805
Target:  5'- uUUUC-CAUUUUAACUCGGACUCGUCUa -3'
miRNA:   3'- -AAAGcGUAAAAUUGAGCCUGAGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.