miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22492 3' -43.7 NC_005068.1 + 95804 0.66 0.999994
Target:  5'- cAUGAGUCCGAgUUAAUUUcGUa---- -3'
miRNA:   3'- cUACUCAGGCUgAAUUAAA-CGcuaaa -5'
22492 3' -43.7 NC_005068.1 + 3034 0.67 0.999974
Target:  5'- aGAUGAGUCgGACUUuGUUUcaaGAUUUc -3'
miRNA:   3'- -CUACUCAGgCUGAAuUAAAcg-CUAAA- -5'
22492 3' -43.7 NC_005068.1 + 22932 0.68 0.99992
Target:  5'- uGAUGAGUCUGACUuugaggacuggcuuaUAAag-GCGGUa- -3'
miRNA:   3'- -CUACUCAGGCUGA---------------AUUaaaCGCUAaa -5'
22492 3' -43.7 NC_005068.1 + 47016 0.68 0.999841
Target:  5'- uGAUGAGUCgGACUUuGUUU-CGAg-- -3'
miRNA:   3'- -CUACUCAGgCUGAAuUAAAcGCUaaa -5'
22492 3' -43.7 NC_005068.1 + 56500 0.69 0.999432
Target:  5'- uAUGAGUCUGAgUUAAUUUGUa---- -3'
miRNA:   3'- cUACUCAGGCUgAAUUAAACGcuaaa -5'
22492 3' -43.7 NC_005068.1 + 56344 0.7 0.999284
Target:  5'- cAUGAGUCUGAgUUAAUUUGUa---- -3'
miRNA:   3'- cUACUCAGGCUgAAUUAAACGcuaaa -5'
22492 3' -43.7 NC_005068.1 + 10155 0.71 0.996999
Target:  5'- cGAUGAGUCCGAgUUAAaaucagauUUUGgCGAg-- -3'
miRNA:   3'- -CUACUCAGGCUgAAUU--------AAAC-GCUaaa -5'
22492 3' -43.7 NC_005068.1 + 47189 0.71 0.996999
Target:  5'- --cGAGUCCGAgUUAAaaUGCGAa-- -3'
miRNA:   3'- cuaCUCAGGCUgAAUUaaACGCUaaa -5'
22492 3' -43.7 NC_005068.1 + 3388 0.71 0.996999
Target:  5'- --cGAGUCCGAgUUAAaaUGCGAa-- -3'
miRNA:   3'- cuaCUCAGGCUgAAUUaaACGCUaaa -5'
22492 3' -43.7 NC_005068.1 + 56261 0.78 0.895411
Target:  5'- cAUGAGUCCGACUUAAUUUcUGAa-- -3'
miRNA:   3'- cUACUCAGGCUGAAUUAAAcGCUaaa -5'
22492 3' -43.7 NC_005068.1 + 3192 0.8 0.827054
Target:  5'- aGAUGAGUCCGAgUUAAaaUGCGAa-- -3'
miRNA:   3'- -CUACUCAGGCUgAAUUaaACGCUaaa -5'
22492 3' -43.7 NC_005068.1 + 10356 0.83 0.653563
Target:  5'- aAUGAGUCCGAgUUAAUUUGUGAa-- -3'
miRNA:   3'- cUACUCAGGCUgAAUUAAACGCUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.