miRNA display CGI

Results 1 - 13 of 13 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
22493	3'	-42.2	NC_005068.1	+	56260	0.66	1
	Target:  5'- aUGAGUCCGAcUUAAUUUcUGAAAa-- -3' miRNA:   3'- -GCUCAGGCUcAAUUAAAcGCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	88602	0.68	0.999995
	Target:  5'- aUGAGUCaGAGUUAAUUUGUaAAAa-- -3' miRNA:   3'- -GCUCAGgCUCAAUUAAACGcUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	88703	0.68	0.999995
	Target:  5'- aUGAGUCaGAGUUAAUUUGUaAAAa-- -3' miRNA:   3'- -GCUCAGgCUCAAUUAAACGcUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	72042	0.71	0.999602
	Target:  5'- aCGAGUCCGAGUUAAaau-UGAAAa-- -3' miRNA:   3'- -GCUCAGGCUCAAUUaaacGCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	56656	0.77	0.977277
	Target:  5'- aCGAGUCaGAGUUAAUUUGUaAAAUUUa -3' miRNA:   3'- -GCUCAGgCUCAAUUAAACGcUUUAAA- -5'
22493	3'	-42.2	NC_005068.1	+	10153	0.77	0.968002
	Target:  5'- aUGAGUCCGAGUUAAaaucagauUUUGgCGAGAa-- -3' miRNA:   3'- -GCUCAGGCUCAAUU--------AAAC-GCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	95802	0.78	0.960493
	Target:  5'- uGAGUCCGAGUUAAUUUcGUaAAAUUa -3' miRNA:   3'- gCUCAGGCUCAAUUAAA-CGcUUUAAa -5'
22493	3'	-42.2	NC_005068.1	+	56342	0.82	0.857569
	Target:  5'- uGAGUCUGAGUUAAUUUGUaAAAUUUu -3' miRNA:   3'- gCUCAGGCUCAAUUAAACGcUUUAAA- -5'
22493	3'	-42.2	NC_005068.1	+	56498	0.83	0.80057
	Target:  5'- uGAGUCUGAGUUAAUUUGUaAAAUUUa -3' miRNA:   3'- gCUCAGGCUCAAUUAAACGcUUUAAA- -5'
22493	3'	-42.2	NC_005068.1	+	3189	0.86	0.645085
	Target:  5'- uGAGUCCGAGUUAAaaUGCGAAAa-- -3' miRNA:   3'- gCUCAGGCUCAAUUaaACGCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	3389	0.89	0.507842
	Target:  5'- aCGAGUCCGAGUUAAaaUGCGAAAa-- -3' miRNA:   3'- -GCUCAGGCUCAAUUaaACGCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	47190	0.89	0.507842
	Target:  5'- aCGAGUCCGAGUUAAaaUGCGAAAa-- -3' miRNA:   3'- -GCUCAGGCUCAAUUaaACGCUUUaaa -5'
22493	3'	-42.2	NC_005068.1	+	10354	0.95	0.267829
	Target:  5'- uGAGUCCGAGUUAAUUUGUGAAAa-- -3' miRNA:   3'- gCUCAGGCUCAAUUAAACGCUUUaaa -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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