miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22493 5' -36.8 NC_005068.1 + 88567 0.71 1
Target:  5'- uAAAAUcUUCAAa-UUAACUCGGcCUCa -3'
miRNA:   3'- -UUUUAaAAGUUaaAAUUGAGCCuGAG- -5'
22493 5' -36.8 NC_005068.1 + 56630 0.66 1
Target:  5'- uAAAAUUUUUAAaaaucgcaaaUUAACUCaGACUCg -3'
miRNA:   3'- -UUUUAAAAGUUaa--------AAUUGAGcCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 56232 0.66 1
Target:  5'- aAAAAUUUUaaaAAUcgcaaaUUAAgUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAg--UUAa-----AAUUgAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 52151 0.66 1
Target:  5'- uGAGAUUcaUCAAUUcUAACUuaCGGACUa -3'
miRNA:   3'- -UUUUAAa-AGUUAAaAUUGA--GCCUGAg -5'
22493 5' -36.8 NC_005068.1 + 72008 0.67 1
Target:  5'- aAAAAUUUcgCAAa-UUAACUCGG-CUCg -3'
miRNA:   3'- -UUUUAAAa-GUUaaAAUUGAGCCuGAG- -5'
22493 5' -36.8 NC_005068.1 + 102895 0.67 1
Target:  5'- aAAAAUcUUCAAaua-AAgUCGGACUCa -3'
miRNA:   3'- -UUUUAaAAGUUaaaaUUgAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 21611 0.69 1
Target:  5'- -------gCAAcg--AACUCGGACUCa -3'
miRNA:   3'- uuuuaaaaGUUaaaaUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 56316 0.7 1
Target:  5'- uAAAAUUUUUAAaaaucgcaaaUUAAgUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAGUUaa--------AAUUgAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 56472 0.7 1
Target:  5'- aAAAAUUUUUAAaaaucgcaaaUUAAgUCGGACUCg -3'
miRNA:   3'- -UUUUAAAAGUUaa--------AAUUgAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 88668 0.77 0.999955
Target:  5'- uAAAAUcUUCAAa-UUAACUCGGAUUCa -3'
miRNA:   3'- -UUUUAaAAGUUaaAAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 3005 0.82 0.997696
Target:  5'- aAGAAUUUUUAuUUuucgcaaaUUAACUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAGUuAA--------AAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 46987 0.82 0.997696
Target:  5'- aAGAAUUUUUAuUUuucgcaaaUUAACUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAGUuAA--------AAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 95768 0.84 0.990462
Target:  5'- uAAAAUcUUCAAa-UUAACUCGGACUCa -3'
miRNA:   3'- -UUUUAaAAGUUaaAAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 3367 0.9 0.882471
Target:  5'- aAAAGUUUUUucucuccaaacucuGAUUUUAACUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAG--------------UUAAAAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 47168 0.9 0.882471
Target:  5'- aAAAGUUUUUucucuccaaaaucuGAUUUUAACUCGGACUCa -3'
miRNA:   3'- -UUUUAAAAG--------------UUAAAAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 3168 0.9 0.875665
Target:  5'- aAAAGUUUUUucucucagaaucuGAUUUUAACUCGGACUCg -3'
miRNA:   3'- -UUUUAAAAG-------------UUAAAAUUGAGCCUGAG- -5'
22493 5' -36.8 NC_005068.1 + 10115 0.92 0.819643
Target:  5'- ---uUUUUCcAUUUUAACUCGGACUCg -3'
miRNA:   3'- uuuuAAAAGuUAAAAUUGAGCCUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.