miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22494 5' -58.1 NC_005069.1 + 12667 0.66 0.546162
Target:  5'- aUCGGGaACAACauaGUuuuucccUCCCGACUGCa -3'
miRNA:   3'- cAGUCCcUGUUGgg-CA-------GGGGCUGACG- -5'
22494 5' -58.1 NC_005069.1 + 18597 0.67 0.4551
Target:  5'- -cCGGGGcCAACCgGagaaCCGGCUGCg -3'
miRNA:   3'- caGUCCCuGUUGGgCagg-GGCUGACG- -5'
22494 5' -58.1 NC_005069.1 + 43762 0.67 0.435759
Target:  5'- aGUUGGGGAUAuGCCCGUUCCUcccgccagugGACaGCu -3'
miRNA:   3'- -CAGUCCCUGU-UGGGCAGGGG----------CUGaCG- -5'
22494 5' -58.1 NC_005069.1 + 8762 0.85 0.026822
Target:  5'- aGUCGGGGACGGgUUGUCCCUGACUGUu -3'
miRNA:   3'- -CAGUCCCUGUUgGGCAGGGGCUGACG- -5'
22494 5' -58.1 NC_005069.1 + 8831 1.12 0.000286
Target:  5'- aGUCAGGGACAACCCGUCCCCGACUGCa -3'
miRNA:   3'- -CAGUCCCUGUUGGGCAGGGGCUGACG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.