miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22497 3' -53.5 NC_005069.1 + 19094 0.77 0.202997
Target:  5'- aCGCuaGCCGCUGaAGUuGCCCGGCAuCAUa -3'
miRNA:   3'- -GCG--UGGCGACaUUAuUGGGCCGU-GUG- -5'
22497 3' -53.5 NC_005069.1 + 44155 0.69 0.556756
Target:  5'- aCGCGCUGCUGauugcaucuuucuGUuACCCGGCugGa -3'
miRNA:   3'- -GCGUGGCGACau-----------UAuUGGGCCGugUg -5'
22497 3' -53.5 NC_005069.1 + 18376 1.11 0.000853
Target:  5'- gCGCACCGCUGUAAUAACCCGGCACACg -3'
miRNA:   3'- -GCGUGGCGACAUUAUUGGGCCGUGUG- -5'
22497 3' -53.5 NC_005069.1 + 33289 0.71 0.466297
Target:  5'- -aCACCGUcGUGAgcUGGCUCGGCAUGCa -3'
miRNA:   3'- gcGUGGCGaCAUU--AUUGGGCCGUGUG- -5'
22497 3' -53.5 NC_005069.1 + 31452 0.68 0.642487
Target:  5'- uGCACCgGCUGUuacUAGCCCcaaGCuACGCg -3'
miRNA:   3'- gCGUGG-CGACAuu-AUUGGGc--CG-UGUG- -5'
22497 3' -53.5 NC_005069.1 + 12585 0.68 0.642487
Target:  5'- aCGCuACCGCcaGUcgcucuACCCGGUACAUa -3'
miRNA:   3'- -GCG-UGGCGa-CAuuau--UGGGCCGUGUG- -5'
22497 3' -53.5 NC_005069.1 + 14018 0.66 0.720982
Target:  5'- uGCAacauauCUGaagaaGUGGUcGCCCGGCGCACg -3'
miRNA:   3'- gCGU------GGCga---CAUUAuUGGGCCGUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.