Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 18040 | 0.66 | 0.88427 |
|
Target: 5'- gCACuGUaUUCGCGCAuuggGACAGCGGUg -3' miRNA: 3'- gGUGcCA-AGGUGCGUca--UUGUUGCCA- -5' |
|||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 22286 | 0.67 | 0.851353 |
|
Target: 5'- aCCACGGUcccagcgCCugGCucuGUAACu-CGGc -3' miRNA: 3'- -GGUGCCAa------GGugCGu--CAUUGuuGCCa -5' |
|||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 16553 | 0.68 | 0.764042 |
|
Target: 5'- aCAUGGcacaggUCCGCGCAGUaAGCAuuauaGGUa -3' miRNA: 3'- gGUGCCa-----AGGUGCGUCA-UUGUug---CCA- -5' |
|||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 251 | 0.69 | 0.74275 |
|
Target: 5'- -uGCGGUUCCAUGCAu---CAAUGGc -3' miRNA: 3'- ggUGCCAAGGUGCGUcauuGUUGCCa -5' |
|||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 41137 | 0.78 | 0.25881 |
|
Target: 5'- aCCACGGUcCCACGUGGUuGCAGCGc- -3' miRNA: 3'- -GGUGCCAaGGUGCGUCAuUGUUGCca -5' |
|||||||
| 22497 | 5' | -51.4 | NC_005069.1 | + | 18341 | 1.11 | 0.001787 |
|
Target: 5'- cCCACGGUUCCACGCAGUAACAACGGUg -3' miRNA: 3'- -GGUGCCAAGGUGCGUCAUUGUUGCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home