miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22498 3' -52.1 NC_005069.1 + 13564 0.66 0.794523
Target:  5'- --aUACUGGCGU------UGGCCCCa -3'
miRNA:   3'- uuaAUGACCGUAauucgcACCGGGGc -5'
22498 3' -52.1 NC_005069.1 + 19718 0.66 0.794523
Target:  5'- --aUACUGacGCGUgcAGUGUGGCCUg- -3'
miRNA:   3'- uuaAUGAC--CGUAauUCGCACCGGGgc -5'
22498 3' -52.1 NC_005069.1 + 31200 0.66 0.784171
Target:  5'- ---aGCUGuCAUUGGGacCGUGGUCCCa -3'
miRNA:   3'- uuaaUGACcGUAAUUC--GCACCGGGGc -5'
22498 3' -52.1 NC_005069.1 + 18331 0.68 0.661629
Target:  5'- --cUGCUGGCGUgGGGCGaaugaUGGUgCCGc -3'
miRNA:   3'- uuaAUGACCGUAaUUCGC-----ACCGgGGC- -5'
22498 3' -52.1 NC_005069.1 + 17399 0.71 0.469392
Target:  5'- -----gUGGCAUUcAGCGUGGUaCCCGu -3'
miRNA:   3'- uuaaugACCGUAAuUCGCACCG-GGGC- -5'
22498 3' -52.1 NC_005069.1 + 30393 0.98 0.008368
Target:  5'- gAAUUACUGGCAUUAAGCGUGGCCCg- -3'
miRNA:   3'- -UUAAUGACCGUAAUUCGCACCGGGgc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.