miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22499 5' -55.4 NC_005069.1 + 32692 0.66 0.616358
Target:  5'- uGAAguGC-CAGCUCA--UCGCCAGUa -3'
miRNA:   3'- -CUUguCGaGUCGGGUuaGGCGGUCAc -5'
22499 5' -55.4 NC_005069.1 + 31168 0.66 0.616358
Target:  5'- uAAUAGC-CAGCaCCGGUCCGCUg--- -3'
miRNA:   3'- cUUGUCGaGUCG-GGUUAGGCGGucac -5'
22499 5' -55.4 NC_005069.1 + 20526 0.66 0.616358
Target:  5'- -cGCAGCUguGCCgAAUgaGCCAGc- -3'
miRNA:   3'- cuUGUCGAguCGGgUUAggCGGUCac -5'
22499 5' -55.4 NC_005069.1 + 17010 0.69 0.423481
Target:  5'- cAACuGCUCAGCaCCAAUuucaCCGuCCAGUa -3'
miRNA:   3'- cUUGuCGAGUCG-GGUUA----GGC-GGUCAc -5'
22499 5' -55.4 NC_005069.1 + 19185 1.09 0.000634
Target:  5'- cGAACAGCUCAGCCCAAUCCGCCAGUGa -3'
miRNA:   3'- -CUUGUCGAGUCGGGUUAGGCGGUCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.