miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
225	3'	-53.6	AC_000008.1	+	30379	0.71	0.357183
	Target:  5'- cUCGuGCGGCGCCUCCuCCAaGGGCAAg -3' miRNA:   3'- -AGU-CGUCGUGGAGGcGGUcUUUGUUg -5'
225	3'	-53.6	AC_000008.1	+	30465	0.69	0.465385
	Target:  5'- -gAGCAGCGCCU--GCUAGAAagacgcaggGCAGCg -3' miRNA:   3'- agUCGUCGUGGAggCGGUCUU---------UGUUG- -5'
225	3'	-53.6	AC_000008.1	+	30490	0.66	0.623149
	Target:  5'- cCGGCAGCGCUUCaGCaccagCAGGAcCAGCc -3' miRNA:   3'- aGUCGUCGUGGAGgCG-----GUCUUuGUUG- -5'
225	3'	-53.6	AC_000008.1	+	30871	0.76	0.174707
	Target:  5'- uUCAGCAGCACCUCCuuGCCcuccucccagcucuGGuauuGCAGCu -3' miRNA:   3'- -AGUCGUCGUGGAGG--CGG--------------UCuu--UGUUG- -5'
225	3'	-53.6	AC_000008.1	+	31664	0.69	0.486848
	Target:  5'- gCAGUGGUgcuACCUCCaccCCAGAGACGGg -3' miRNA:   3'- aGUCGUCG---UGGAGGc--GGUCUUUGUUg -5'
225	3'	-53.6	AC_000008.1	+	33303	0.66	0.6115
	Target:  5'- gCAGCauaaGGCGCCuugUCCuCCGGgcACAGCa -3' miRNA:   3'- aGUCG----UCGUGG---AGGcGGUCuuUGUUG- -5'
225	3'	-53.6	AC_000008.1	+	34801	0.68	0.519885
	Target:  5'- --cGCGGcCACUUccCCGCCAGGAACcauGACa -3' miRNA:   3'- aguCGUC-GUGGA--GGCGGUCUUUG---UUG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home