miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
225 5' -62.9 AC_000008.1 + 33228 0.66 0.269588
Target:  5'- aCUGCUGCCG-CCGCCGCuccGUcCUgCAGg -3'
miRNA:   3'- -GGCGACGGCgGGCGGUGc--CAcGA-GUC- -5'
225 5' -62.9 AC_000008.1 + 16198 0.66 0.269588
Target:  5'- cCCGgcaCUGCCGCCCaacgcgcgGCgGCGGcccUGCUUAa -3'
miRNA:   3'- -GGC---GACGGCGGG--------CGgUGCC---ACGAGUc -5'
225 5' -62.9 AC_000008.1 + 18142 0.66 0.25004
Target:  5'- aCGCaUGCCGCCCGUCA-GGccgugGC-CGGc -3'
miRNA:   3'- gGCG-ACGGCGGGCGGUgCCa----CGaGUC- -5'
225 5' -62.9 AC_000008.1 + 23805 0.66 0.24815
Target:  5'- gCCGCUGCCcguGCCaGCCAgGGcccuuugcaggcugUGCaUCAGc -3'
miRNA:   3'- -GGCGACGG---CGGgCGGUgCC--------------ACG-AGUC- -5'
225 5' -62.9 AC_000008.1 + 27350 0.67 0.225812
Target:  5'- cCCGCggcccaCCGCCCGCCgcGCGGUaccguagucGCgccgCGGg -3'
miRNA:   3'- -GGCGac----GGCGGGCGG--UGCCA---------CGa---GUC- -5'
225 5' -62.9 AC_000008.1 + 3656 0.68 0.188215
Target:  5'- gCGCaUGCC-CCCauggGCCGgGGUGCgUCAGa -3'
miRNA:   3'- gGCG-ACGGcGGG----CGGUgCCACG-AGUC- -5'
225 5' -62.9 AC_000008.1 + 20832 0.68 0.183316
Target:  5'- uUGCUGCCGCCugCGCCACccccgcccUGUUCGGu -3'
miRNA:   3'- gGCGACGGCGG--GCGGUGcc------ACGAGUC- -5'
225 5' -62.9 AC_000008.1 + 5355 0.69 0.152092
Target:  5'- -gGCUGCgCGCUgGCCAgGGUGCg--- -3'
miRNA:   3'- ggCGACG-GCGGgCGGUgCCACGaguc -5'
225 5' -62.9 AC_000008.1 + 29244 0.7 0.129256
Target:  5'- gCGCuUGCCGCCCGCgCAUGGcag-CAGg -3'
miRNA:   3'- gGCG-ACGGCGGGCG-GUGCCacgaGUC- -5'
225 5' -62.9 AC_000008.1 + 19628 0.75 0.052797
Target:  5'- cCCGCaugGCCGCCCGUCGgcCGGUGCg--- -3'
miRNA:   3'- -GGCGa--CGGCGGGCGGU--GCCACGaguc -5'
225 5' -62.9 AC_000008.1 + 9187 0.75 0.049871
Target:  5'- gCCGCUGCCG-CUGCCGcCGGUGCa--- -3'
miRNA:   3'- -GGCGACGGCgGGCGGU-GCCACGaguc -5'
225 5' -62.9 AC_000008.1 + 26148 1.09 0.000116
Target:  5'- cCCGCUGCCGCCCGCCACGGUGCUCAGc -3'
miRNA:   3'- -GGCGACGGCGGGCGGUGCCACGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.