miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2250 5' -50.6 NC_001405.1 + 15066 0.78 0.240213
Target:  5'- --aACAACAGUGGCAGCGgcGCGGAa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCa-CGUCUgg -5'
2250 5' -50.6 NC_001405.1 + 13023 0.76 0.306878
Target:  5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3'
miRNA:   3'- caaugUUGUCGCCGUUGCACG----UCUGg -5'
2250 5' -50.6 NC_001405.1 + 2172 0.75 0.332045
Target:  5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3'
miRNA:   3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5'
2250 5' -50.6 NC_001405.1 + 11064 0.74 0.367906
Target:  5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3'
miRNA:   3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5'
2250 5' -50.6 NC_001405.1 + 26828 0.74 0.396496
Target:  5'- --cACAGCGGCGGCAGCa-GCAGGa- -3'
miRNA:   3'- caaUGUUGUCGCCGUUGcaCGUCUgg -5'
2250 5' -50.6 NC_001405.1 + 34904 0.72 0.501301
Target:  5'- uGUUGCAugGGCGGCGAUauaaaaUGCAGguGCUg -3'
miRNA:   3'- -CAAUGUugUCGCCGUUGc-----ACGUC--UGG- -5'
2250 5' -50.6 NC_001405.1 + 8559 0.72 0.490238
Target:  5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3'
miRNA:   3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 17247 0.72 0.468464
Target:  5'- gGUUGCcucGGCGGUGGCAgaugccGCgGUGCAGGCg -3'
miRNA:   3'- -CAAUG---UUGUCGCCGU------UG-CACGUCUGg -5'
2250 5' -50.6 NC_001405.1 + 8914 0.73 0.446148
Target:  5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3'
miRNA:   3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 10497 0.73 0.416333
Target:  5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5'
2250 5' -50.6 NC_001405.1 + 10333 0.73 0.416333
Target:  5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3'
miRNA:   3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 26589 0.69 0.651903
Target:  5'- --gGCuAACGGCGGCGGC-UGCuuAGACUu -3'
miRNA:   3'- caaUG-UUGUCGCCGUUGcACG--UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 15770 0.69 0.687062
Target:  5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3'
miRNA:   3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5'
2250 5' -50.6 NC_001405.1 + 6535 0.68 0.721677
Target:  5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3'
miRNA:   3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16378 0.68 0.73303
Target:  5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3'
miRNA:   3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16486 0.68 0.744267
Target:  5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3'
miRNA:   3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 25872 0.67 0.787772
Target:  5'- ----aAGCAGuuGCGAauUGCAGACCa -3'
miRNA:   3'- caaugUUGUCgcCGUUgcACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 18629 0.67 0.798219
Target:  5'- gGUUACAACAaCGGCgGACGgcccugGCAGcACa -3'
miRNA:   3'- -CAAUGUUGUcGCCG-UUGCa-----CGUC-UGg -5'
2250 5' -50.6 NC_001405.1 + 34856 0.66 0.808466
Target:  5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3'
miRNA:   3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5'
2250 5' -50.6 NC_001405.1 + 16225 0.81 0.156235
Target:  5'- --gGCGGCGGUGGCGACGUGCuacgcGCCu -3'
miRNA:   3'- caaUGUUGUCGCCGUUGCACGuc---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.