Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2250 | 5' | -50.6 | NC_001405.1 | + | 28767 | 0.66 | 0.828311 |
Target: 5'- -gUGCAGCAgGCGGCAACccuaAGGCa -3' miRNA: 3'- caAUGUUGU-CGCCGUUGcacgUCUGg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 15273 | 0.73 | 0.457764 |
Target: 5'- gGUUGC-GCAGCGGgGGCG-GCAGcuucuGCCg -3' miRNA: 3'- -CAAUGuUGUCGCCgUUGCaCGUC-----UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 26589 | 0.69 | 0.651903 |
Target: 5'- --gGCuAACGGCGGCGGC-UGCuuAGACUu -3' miRNA: 3'- caaUG-UUGUCGCCGUUGcACG--UCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 15770 | 0.69 | 0.687062 |
Target: 5'- uGUUGC-GCAGCGGUAGCGUcCcguGAUCu -3' miRNA: 3'- -CAAUGuUGUCGCCGUUGCAcGu--CUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 16378 | 0.68 | 0.73303 |
Target: 5'- -cUGCuGCGGCGGCcgcuCGUcGCcuGGACCu -3' miRNA: 3'- caAUGuUGUCGCCGuu--GCA-CG--UCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 16486 | 0.68 | 0.744267 |
Target: 5'- aGUUGCGcggGgGGCGGguGCGcacgggcacgcGCAGGCCg -3' miRNA: 3'- -CAAUGU---UgUCGCCguUGCa----------CGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 26285 | 0.78 | 0.239545 |
Target: 5'- --gGCGGCGGCGGCAGC-UGCAGcuucuuuuuggguGCCa -3' miRNA: 3'- caaUGUUGUCGCCGUUGcACGUC-------------UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 17562 | 0.72 | 0.47929 |
Target: 5'- --gGCGACGGCGGCGGCGgGUu--CCa -3' miRNA: 3'- caaUGUUGUCGCCGUUGCaCGucuGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 6535 | 0.68 | 0.721677 |
Target: 5'- --cGCAAgGGCGGCcGCcucUGCuGGACCa -3' miRNA: 3'- caaUGUUgUCGCCGuUGc--ACG-UCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 25872 | 0.67 | 0.787772 |
Target: 5'- ----aAGCAGuuGCGAauUGCAGACCa -3' miRNA: 3'- caaugUUGUCgcCGUUgcACGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 34856 | 0.66 | 0.808466 |
Target: 5'- --gGCGGggaAGUGGCcgcgcuggucCGUGCAGACCu -3' miRNA: 3'- caaUGUUg--UCGCCGuu--------GCACGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 16225 | 0.81 | 0.156235 |
Target: 5'- --gGCGGCGGUGGCGACGUGCuacgcGCCu -3' miRNA: 3'- caaUGUUGUCGCCGUUGCACGuc---UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 18629 | 0.67 | 0.798219 |
Target: 5'- gGUUACAACAaCGGCgGACGgcccugGCAGcACa -3' miRNA: 3'- -CAAUGUUGUcGCCG-UUGCa-----CGUC-UGg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 3839 | 0.71 | 0.523744 |
Target: 5'- -cUGCAGCggcugaAGCGGCGGCGgaggcUGCAGucuCCa -3' miRNA: 3'- caAUGUUG------UCGCCGUUGC-----ACGUCu--GG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 33280 | 0.74 | 0.39552 |
Target: 5'- --aGCGGCGGCGGCAgcaguuuauucgcGCGcugcUGCAGcACCa -3' miRNA: 3'- caaUGUUGUCGCCGU-------------UGC----ACGUC-UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 9407 | 0.71 | 0.546561 |
Target: 5'- gGggAC-ACGGCGGCGACGacgGCGcACCg -3' miRNA: 3'- -CaaUGuUGUCGCCGUUGCa--CGUcUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 34904 | 0.72 | 0.501301 |
Target: 5'- uGUUGCAugGGCGGCGAUauaaaaUGCAGguGCUg -3' miRNA: 3'- -CAAUGUugUCGCCGUUGc-----ACGUC--UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 8559 | 0.72 | 0.490238 |
Target: 5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3' miRNA: 3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 17247 | 0.72 | 0.468464 |
Target: 5'- gGUUGCcucGGCGGUGGCAgaugccGCgGUGCAGGCg -3' miRNA: 3'- -CAAUG---UUGUCGCCGU------UG-CACGUCUGg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 11064 | 0.74 | 0.367906 |
Target: 5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3' miRNA: 3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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