Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2250 | 5' | -50.6 | NC_001405.1 | + | 9980 | 0.69 | 0.651903 |
Target: 5'- uUUGCAucuaucgcuACGGCGGCGGCGgaGUuuGGCCg -3' miRNA: 3'- cAAUGU---------UGUCGCCGUUGCa-CGu-CUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 12317 | 0.7 | 0.628336 |
Target: 5'- ---cCGGCGGUgcgGGCGGCGcUGCAGAgCCa -3' miRNA: 3'- caauGUUGUCG---CCGUUGC-ACGUCU-GG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 24418 | 0.7 | 0.604785 |
Target: 5'- cGUUGCAAgAGCGcaGCGAUGUGCcccucGCCa -3' miRNA: 3'- -CAAUGUUgUCGC--CGUUGCACGuc---UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 13580 | 0.71 | 0.573177 |
Target: 5'- aGUUGCAACAGCgcgagcaggcagaGGCGGCGcugcgaaaggaaagcUuccGCAGGCCa -3' miRNA: 3'- -CAAUGUUGUCG-------------CCGUUGC---------------A---CGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 13540 | 0.71 | 0.569686 |
Target: 5'- --gACGACAGCGuguuuuccccGCAACc-GCAGACCc -3' miRNA: 3'- caaUGUUGUCGC----------CGUUGcaCGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 9407 | 0.71 | 0.546561 |
Target: 5'- gGggAC-ACGGCGGCGACGacgGCGcACCg -3' miRNA: 3'- -CaaUGuUGUCGCCGUUGCa--CGUcUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 3839 | 0.71 | 0.523744 |
Target: 5'- -cUGCAGCggcugaAGCGGCGGCGgaggcUGCAGucuCCa -3' miRNA: 3'- caAUGUUG------UCGCCGUUGC-----ACGUCu--GG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 34904 | 0.72 | 0.501301 |
Target: 5'- uGUUGCAugGGCGGCGAUauaaaaUGCAGguGCUg -3' miRNA: 3'- -CAAUGUugUCGCCGUUGc-----ACGUC--UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 8559 | 0.72 | 0.490238 |
Target: 5'- -aUGCAucuaaaAGCGGUGACGcggGCGGGCCc -3' miRNA: 3'- caAUGUug----UCGCCGUUGCa--CGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 17562 | 0.72 | 0.47929 |
Target: 5'- --gGCGACGGCGGCGGCGgGUu--CCa -3' miRNA: 3'- caaUGUUGUCGCCGUUGCaCGucuGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 17247 | 0.72 | 0.468464 |
Target: 5'- gGUUGCcucGGCGGUGGCAgaugccGCgGUGCAGGCg -3' miRNA: 3'- -CAAUG---UUGUCGCCGU------UG-CACGUCUGg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 15273 | 0.73 | 0.457764 |
Target: 5'- gGUUGC-GCAGCGGgGGCG-GCAGcuucuGCCg -3' miRNA: 3'- -CAAUGuUGUCGCCgUUGCaCGUC-----UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 8914 | 0.73 | 0.446148 |
Target: 5'- --cGCuccACGGUGGCGGCGaggucguuggagaUGCGGGCCa -3' miRNA: 3'- caaUGu--UGUCGCCGUUGC-------------ACGUCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 10497 | 0.73 | 0.416333 |
Target: 5'- uGUUGC-GCAGCGGCAAaaaGUGCu--CCa -3' miRNA: 3'- -CAAUGuUGUCGCCGUUg--CACGucuGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 10333 | 0.73 | 0.416333 |
Target: 5'- -gUGCGGCGGCGGCuGGCG-GUagagGGGCCa -3' miRNA: 3'- caAUGUUGUCGCCG-UUGCaCG----UCUGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 26828 | 0.74 | 0.396496 |
Target: 5'- --cACAGCGGCGGCAGCa-GCAGGa- -3' miRNA: 3'- caaUGUUGUCGCCGUUGcaCGUCUgg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 33280 | 0.74 | 0.39552 |
Target: 5'- --aGCGGCGGCGGCAgcaguuuauucgcGCGcugcUGCAGcACCa -3' miRNA: 3'- caaUGUUGUCGCCGU-------------UGC----ACGUC-UGG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 11064 | 0.74 | 0.367906 |
Target: 5'- ---uCAGCAGCGGCAagagcaagagcaGCG-GCAGACa -3' miRNA: 3'- caauGUUGUCGCCGU------------UGCaCGUCUGg -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 2172 | 0.75 | 0.332045 |
Target: 5'- --gGCGGCGGCGGCGGCaggaGCAGAgCCc -3' miRNA: 3'- caaUGUUGUCGCCGUUGca--CGUCU-GG- -5' |
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2250 | 5' | -50.6 | NC_001405.1 | + | 13023 | 0.76 | 0.306878 |
Target: 5'- ----gGACAGUGGCAGCGUGUcccgGGACa -3' miRNA: 3'- caaugUUGUCGCCGUUGCACG----UCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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