miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22501 3' -56.3 NC_005069.1 + 31029 0.78 0.106866
Target:  5'- cGUAGaguuaGCGUcuGGGACCGUGGUCACAa -3'
miRNA:   3'- aCGUUgg---UGCA--CCCUGGCACCAGUGU- -5'
22501 3' -56.3 NC_005069.1 + 34446 0.75 0.186533
Target:  5'- uUGCAugguuaacuACCuucugauUGUGGGACCGUGGUCcCAg -3'
miRNA:   3'- -ACGU---------UGGu------GCACCCUGGCACCAGuGU- -5'
22501 3' -56.3 NC_005069.1 + 7261 0.68 0.477226
Target:  5'- -aUAACCACG-GGGGCCGcUGGUaaaACu -3'
miRNA:   3'- acGUUGGUGCaCCCUGGC-ACCAg--UGu -5'
22501 3' -56.3 NC_005069.1 + 41069 1.09 0.000674
Target:  5'- cUGCAACCACGUGGGACCGUGGUCACAg -3'
miRNA:   3'- -ACGUUGGUGCACCCUGGCACCAGUGU- -5'
22501 3' -56.3 NC_005069.1 + 22218 0.81 0.071447
Target:  5'- --gAGCCagGCGcUGGGACCGUGGUCGCAu -3'
miRNA:   3'- acgUUGG--UGC-ACCCUGGCACCAGUGU- -5'
22501 3' -56.3 NC_005069.1 + 31200 0.72 0.298876
Target:  5'- aGCugUCAU-UGGGACCGUGGUCcCAg -3'
miRNA:   3'- aCGuuGGUGcACCCUGGCACCAGuGU- -5'
22501 3' -56.3 NC_005069.1 + 491 0.68 0.487493
Target:  5'- -uUAACCAauuuuaaaauUGGGACCGUGGUCcCAa -3'
miRNA:   3'- acGUUGGUgc--------ACCCUGGCACCAGuGU- -5'
22501 3' -56.3 NC_005069.1 + 18265 0.68 0.508333
Target:  5'- aUGCAccguuguuACUGCGUGGaACCGUGGgaaUACAg -3'
miRNA:   3'- -ACGU--------UGGUGCACCcUGGCACCa--GUGU- -5'
22501 3' -56.3 NC_005069.1 + 10239 0.66 0.572845
Target:  5'- cGCAGCacaaGCG-GGGAUCG-GGUUugAg -3'
miRNA:   3'- aCGUUGg---UGCaCCCUGGCaCCAGugU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.