miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22502 5' -54.3 NC_005069.1 + 42369 0.66 0.759989
Target:  5'- aGCCGGuuacGGuuCCGGCgu-CACACCuACCa -3'
miRNA:   3'- -CGGCCc---UC--GGCUGaauGUGUGGuUGG- -5'
22502 5' -54.3 NC_005069.1 + 30864 0.67 0.70679
Target:  5'- -aUGGGGGCUGGgcCUgACGCugCAGCUc -3'
miRNA:   3'- cgGCCCUCGGCU--GAaUGUGugGUUGG- -5'
22502 5' -54.3 NC_005069.1 + 8359 0.67 0.67388
Target:  5'- aGCUGGGAGCaUGGCguauucugGCGaggauuuuCCAGCCa -3'
miRNA:   3'- -CGGCCCUCG-GCUGaa------UGUgu------GGUUGG- -5'
22502 5' -54.3 NC_005069.1 + 15790 0.67 0.651719
Target:  5'- uGCgGGuGAaCCGACUuauauUGCugGCCAGCa -3'
miRNA:   3'- -CGgCC-CUcGGCUGA-----AUGugUGGUUGg -5'
22502 5' -54.3 NC_005069.1 + 22199 0.68 0.596176
Target:  5'- aGCUGGuuGCCGAgUUACAgaGCCAGgCg -3'
miRNA:   3'- -CGGCCcuCGGCUgAAUGUg-UGGUUgG- -5'
22502 5' -54.3 NC_005069.1 + 45165 0.73 0.363896
Target:  5'- uGUCGGGAcugccCCGGCUUgugGCGCuuCCAGCCa -3'
miRNA:   3'- -CGGCCCUc----GGCUGAA---UGUGu-GGUUGG- -5'
22502 5' -54.3 NC_005069.1 + 45866 0.73 0.330259
Target:  5'- uGUCGGGAcugccCCGGCUUAUGCcgcuuCCAGCCa -3'
miRNA:   3'- -CGGCCCUc----GGCUGAAUGUGu----GGUUGG- -5'
22502 5' -54.3 NC_005069.1 + 42600 1.15 0.000419
Target:  5'- cGCCGGGAGCCGACUUACACACCAACCg -3'
miRNA:   3'- -CGGCCCUCGGCUGAAUGUGUGGUUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.